Factsheet for TraesCS1B01G083400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G066000.1	Wheat	cytosol	95.96	95.96
TraesCS1A01G065300.2	Wheat	cytosol	95.96	95.96
HORVU0Hr1G000250.10	Barley	cytosol	41.7	84.12
Os01t0383700-01	Rice	nucleus	17.23	67.5
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	64.26	63.98
CDY72277	Canola	cytosol, nucleus	26.6	63.78
CDY67127	Canola	mitochondrion	13.62	62.14
GSMUA_Achr3P23760_001	Banana	cytosol	48.51	61.96
CDX91264	Canola	cytosol	44.47	57.1
VIT_07s0104g00900.t01	Wine grape	cytosol	57.45	55.56
CDX90908	Canola	nucleus	57.23	54.79
Bra000849.1-P	Field mustard	nucleus	57.02	54.69
AT4G03020.1	Thale cress	nucleus	57.23	54.56
Solyc06g008880.2.1	Tomato	nucleus	54.89	54.43
CDY17974	Canola	nucleus	56.81	54.38
TraesCS1B01G263400.2	Wheat	nucleus	52.77	54.03
KRH20977	Soybean	cytosol	54.26	53.68
PGSC0003DMT400016081	Potato	nucleus	53.19	53.53
Bra034178.1-P	Field mustard	cytosol	57.87	53.33
Solyc01g080690.2.1	Tomato	cytosol	53.19	53.3
CDY22095	Canola	cytosol	57.45	52.94
KRH31954	Soybean	cytosol	55.11	52.54
KRH71501	Soybean	cytosol	36.6	50.15
KRH11292	Soybean	cytosol	54.26	47.05
CDY21934	Canola	plastid	58.09	28.62

Protein Annotations

EnsemblPlants:TraesCS1B01G083400.1	EnsemblPlantsGene:TraesCS1B01G083400	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:+:67440246..67449981

Molecular Weight (calculated)

53104.2 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.462

Length

470 amino acids

Sequence
(BLAST)

001: MCSKRKTCHG GPSQQEQDSP AVANEVFVID EEVSHLTRLK SEPSERTRAC LHAGKSHIST FKLLSSRESN RSGFGRFSSV DCCYALRKHL PVRGPWRVDS
101: MDCAAYISQF SSDGSLLIAG FRGGRIRIYN ADKKWKIHKD ITCKSLRWTV SDIALSPDQQ YLAYSSLSPT VHIVNVQNAV KQSHANITDI HEVLNFSAAD
201: DESSFGIFSI KFSKDGRELV VGNSNESICI YDLGANKVKE RIHAHVADVN AVTFADESSD VLYSGSDDSL CKVWDRRCHK RAKPVGVLAG HLDGVTFIDS
301: HGDGHYFVSN CKDQTIKLWD IRKLSSATED CTPKAYEWDY RWMTYPSEAR FLKHPYDQSL ATFRGHSVLR TLIRCYFSPM HSTGQRYIYT GSSDQCVYIY
401: DVATGNVVET LKWHESIVRD CSWHPHLPTL VSSSWDGYLV RWEATEDDDD PTTLNKGKQR MCPEGYTFTL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.