Factsheet for Solyc01g080690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016081	Potato	nucleus	95.31	95.72
GSMUA_Achr3P23760_001	Banana	cytosol	51.81	66.03
Solyc06g008880.2.1	Tomato	nucleus	65.25	64.56
Os05t0144100-01	Rice	cytosol, nucleus	42.64	60.79
Os05t0407200-01	Rice	nucleus	58.85	59.61
GSMUA_Achr10P...	Banana	cytosol	60.13	58.51
TraesCS1D01G254400.1	Wheat	nucleus	56.93	58.3
TraesCS1A01G255000.1	Wheat	nucleus	56.72	58.08
TraesCS1B01G263400.2	Wheat	nucleus	56.29	57.52
KXG21980	Sorghum	cytosol	56.29	57.39
HORVU1Hr1G060850.2	Barley	cytosol	38.59	56.92
Zm00001d010305_P004	Maize	cytosol	55.44	56.52
TraesCS1D01G088200.1	Wheat	nucleus	56.72	56.36
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	56.5	56.14
TraesCS1A01G086800.2	Wheat	nucleus	55.86	55.63
HORVU1Hr1G018790.5	Barley	cytosol	57.36	53.8
TraesCS1B01G083400.1	Wheat	cytosol	53.3	53.19
TraesCS1D01G066000.1	Wheat	cytosol	52.67	52.55
TraesCS1A01G065300.2	Wheat	cytosol	52.45	52.34
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	52.24	50.41
HORVU0Hr1G000250.10	Barley	cytosol	24.52	49.36
Zm00001d010892_P013	Maize	plastid	52.24	48.23
Os01t0383700-01	Rice	nucleus	10.23	40.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4AXW3	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc01g080690.2	EnsemblPlants:Solyc01g080690.2.1
UniParc:UPI0002762548	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr1:+:79931058..79938176

Molecular Weight (calculated)

53243.8 Da

IEP (calculated)

8.930

GRAVY (calculated)

-0.519

Length

469 amino acids

Sequence
(BLAST)

001: MSRSRRFLNE RARGDGMKLI DEGGTSVLDH EISQLTKIRS NPHERMRHLL PGKGKEPVSS VKMLAAREGN YTGRGRFSSS DCCHLLSRYL PTNGPSVVDQ
101: MRSCAYVSQF STDGSLFVAG FQESHIRIYN VDQGWKIQKD IRAKSLRWTI TDTSLSPDQR FLVYSSISPI VHIVDVGSGM KQSVANVTEI HEGLEFSFPT
201: YDHDNYTFGI FSVKFSTDGR ELVAGCSDNS IYVYDLEAKR LSLRIPAHMS DVNAVCFADE TGHLIYSGSD DSLCKVWDRR CFGTREQAAG VLIGHLEGIT
301: YVDTRGDGRY LISNGKDQAI KLWDIRKMSS NINYSPRPRS YDWDYRWMGY PEHVRNKRNP HDLSLSTYKG HSVLRTLIRC YFSPAHSTGQ KFIYAGSSDS
401: SVYIYDVVSG ARVAKLDYHQ EPVRDCNWHP YYPTLVSSGW DGIIAKWEFS GADTSPLPKK PLSRRWRRS

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.