Factsheet for HORVU1Hr1G018790.5

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G088200.1	Wheat	nucleus	85.6	90.68
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	85.4	90.47
TraesCS1A01G086800.2	Wheat	nucleus	85.2	90.45
Os05t0144100-01	Rice	cytosol, nucleus	53.0	80.55
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	64.6	66.46
GSMUA_Achr3P23760_001	Banana	cytosol	48.4	65.76
Zm00001d010892_P013	Maize	plastid	66.8	65.75
CDY72277	Canola	cytosol, nucleus	24.4	62.24
HORVU0Hr1G000250.10	Barley	cytosol	28.2	60.52
CDX91264	Canola	cytosol	43.4	59.29
CDY67127	Canola	mitochondrion	12.0	58.25
PGSC0003DMT400016081	Potato	nucleus	53.6	57.39
Solyc01g080690.2.1	Tomato	cytosol	53.8	57.36
HORVU1Hr1G060850.2	Barley	cytosol	36.4	57.23
VIT_07s0104g00900.t01	Wine grape	cytosol	54.2	55.76
KRH20977	Soybean	cytosol	52.8	55.58
Solyc06g008880.2.1	Tomato	nucleus	52.6	55.49
AT4G03020.1	Thale cress	nucleus	54.6	55.38
Bra000849.1-P	Field mustard	nucleus	53.2	54.29
CDY17974	Canola	nucleus	53.2	54.18
CDX90908	Canola	nucleus	53.2	54.18
Bra034178.1-P	Field mustard	cytosol	54.4	53.33
KRH31954	Soybean	cytosol	52.4	53.14
CDY22095	Canola	cytosol	54.2	53.14
KRH71501	Soybean	cytosol	35.2	51.31
KRH11292	Soybean	cytosol	52.6	48.52
CDY21934	Canola	plastid	54.2	28.41

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287ET17	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU1Hr1G018790	EnsemblPlants:HORVU1Hr1G018790.5	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B4633C6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr1H:+:70062239..70069309

Molecular Weight (calculated)

56225.9 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.470

Length

500 amino acids

Sequence
(BLAST)

001: LVFLPPPHSP LLPPPNPIQD PVDLSEAVPV AMAAAGRLRG RRRAQKEVER ELEPFTIEEE VSHLTRAWSE PCPGTRAAVR GARRKRGVSA FDMLSSRESG
101: WSGGGGFCSA DRAYAAGRHL PAVGPWCVED MDSEAYVSQF SSDGSLLVAG FRGSRIRVYD VDKGWKVHKN ISCRSMRWTV SDIALSPDQR YLAYSSLSPI
201: VHIVNVQNAG RESYANVTEI HEGLEFCDDD EYSFGIFSVK FSKDGREVVV GNNDCSIYVY DLGANKVSDR IRAHMGDVNT VTFADESGNL LYSGSDDNLC
301: KVWDRRCLVR EKPAGVLTGH LDGITFIDSR GDGRYLISNC KDQTIKLWDV RKMSATVKGR QPRLYDWDYR WMSFPSHARY YKHPDDLSLA TYRGHSVLRT
401: LIRCYFSPMH STGQRYIYTG SSDDSVHIYD VVTGATVKKL SWHGSIIRDC TWHPYRPTLV SSSWDGYLAR WEASGDNEDP SVLTCDEQRN SPYHETYGLL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.