CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G000250.10	Barley	cytosol	63.78	53.65
CDX91264	Canola	cytosol	83.67	44.81
CDY17974	Canola	nucleus	100.0	39.92
KRH71501	Soybean	cytosol	69.39	39.65
CDX90908	Canola	nucleus	98.47	39.31
AT4G03020.1	Thale cress	nucleus	93.37	37.12
Os05t0144100-01	Rice	cytosol, nucleus	61.22	36.47
CDY22095	Canola	cytosol	91.33	35.1
GSMUA_Achr3P23760_001	Banana	cytosol	64.8	34.51
Solyc06g008880.2.1	Tomato	nucleus	73.47	30.38
VIT_07s0104g00900.t01	Wine grape	cytosol	73.98	29.84
KRH31954	Soybean	cytosol	74.49	29.61
PGSC0003DMT400016081	Potato	nucleus	66.84	28.05
TraesCS1D01G066000.1	Wheat	cytosol	63.78	26.6
TraesCS1B01G083400.1	Wheat	cytosol	63.78	26.6
TraesCS1A01G065300.2	Wheat	cytosol	63.27	26.38
GSMUA_Achr10P...	Banana	cytosol	63.78	25.93
TraesCS1A01G086800.2	Wheat	nucleus	62.24	25.9
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	63.78	25.72
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	61.73	25.64
Zm00001d010305_P004	Maize	cytosol	59.69	25.43
TraesCS1D01G088200.1	Wheat	nucleus	61.22	25.42
KXG21980	Sorghum	cytosol	58.67	25.0
TraesCS1D01G254400.1	Wheat	nucleus	57.65	24.67
TraesCS1A01G255000.1	Wheat	nucleus	57.65	24.67
Os05t0407200-01	Rice	nucleus	58.16	24.62
TraesCS1B01G263400.2	Wheat	nucleus	57.65	24.62
HORVU1Hr1G018790.5	Barley	cytosol	62.24	24.4
Zm00001d010892_P013	Maize	plastid	62.76	24.21
CDY21934	Canola	plastid	92.35	18.97
HORVU1Hr1G060850.2	Barley	cytosol	15.31	9.43
Os01t0383700-01	Rice	nucleus	0.0	0.0
CDY67127	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078K314	EnsemblPlants:CDY72277	ProteinID:CDY72277	ProteinID:CDY72277.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00026137001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847	PANTHER:PTHR19847:SF15
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF3E4F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaCnng76860DBnaCnng76860D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K314]

Coordinates

chrLK049853:-:880..1947

Molecular Weight (calculated)

22848.0 Da

IEP (calculated)

9.650

GRAVY (calculated)

-0.691

Length

196 amino acids

Sequence
(BLAST)

001: VWDRRCFIGR DKAAGVLVGH LEGVTFIDSR GDGRYFISNG KDQTIKLWDI RKMSSTPPAK HDVIRNYEWD YRWMDYPPEA RDLKHPFDQS VATYKGHSVL
101: RTLIRCYFSP SHSTGQKYIY TGSNDSSVYI YDLVSGDKVA VLKHHSSPVR DCNWHPNYPT LISSSWDGDL VKWEFPGRGE APIMSKKRVR RRHLYY

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.