Factsheet for Zm00001d010305_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21980	Sorghum	cytosol	93.26	93.26
Os05t0407200-01	Rice	nucleus	78.91	78.4
HORVU1Hr1G060850.2	Barley	cytosol	52.83	76.42
TraesCS1B01G263400.2	Wheat	nucleus	75.87	76.03
TraesCS1A01G255000.1	Wheat	nucleus	74.57	74.89
TraesCS1D01G254400.1	Wheat	nucleus	73.91	74.24
CDX91264	Canola	cytosol	47.61	59.84
CDY72277	Canola	cytosol, nucleus	25.43	59.69
GSMUA_Achr10P...	Banana	cytosol	62.39	59.54
VIT_07s0104g00900.t01	Wine grape	cytosol	62.61	59.26
KRH31954	Soybean	cytosol	63.26	59.03
CDY67127	Canola	mitochondrion	13.04	58.25
KRH20977	Soybean	cytosol	59.35	57.47
Solyc06g008880.2.1	Tomato	nucleus	59.13	57.38
Bra000849.1-P	Field mustard	nucleus	60.22	56.53
PGSC0003DMT400016081	Potato	nucleus	57.17	56.32
CDY17974	Canola	nucleus	59.78	56.01
CDX90908	Canola	nucleus	59.78	56.01
AT4G03020.1	Thale cress	nucleus	60.0	55.98
Solyc01g080690.2.1	Tomato	cytosol	56.52	55.44
KRH71501	Soybean	cytosol	40.87	54.81
Bra034178.1-P	Field mustard	cytosol	60.22	54.31
CDY22095	Canola	cytosol	59.57	53.73
KRH11292	Soybean	cytosol	59.13	50.18
Zm00001d010892_P013	Maize	plastid	53.7	48.62
CDY21934	Canola	plastid	60.43	29.14

Protein Annotations

EntrezGene:100281565	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:AQK93808.1	UniProt:B4FJD8	EMBL:BT037226
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847
PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00017B6EA1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d010305	EnsemblPlants:Zm00001d010305_P004	EnsemblPlants:Zm00001d010305_T004	:

Description

transducin family protein / WD-40 repeat family protein

Coordinates

chr8:-:108605970..108617254

Molecular Weight (calculated)

51463.9 Da

IEP (calculated)

6.737

GRAVY (calculated)

-0.459

Length

460 amino acids

Sequence
(BLAST)

001: MGYGMSRLDD EYYEAEGQNT GGSGSVQVND EFATLHNDIF HMTRMRSGLT ESYKSMGTNR GIISTAKLLS RREIDCSGKG MFSSGDRAFV LGRHVPMNNP
101: ELLDRMDSRA YVSQFSADGT LFVAGFQGSH IRIYDVDRGW SIHKDIHARC LRWTISDVSL SPDQRYLAYS SLAPIIHIVN VGNAARESYA NVTDIHDGLD
201: FSQHEDVQYS FGIFSVKFSS DGRELVAGSN DDSIYVYDLH ANKLTLRLSA HTSDVNTVAF ADETGHLIYS GSDDTLCKVW DRRCLSAGQA AGVLTGHLHG
301: ITHIDSRGDG RSFISNGKDQ AIKLWDIRKM MSNADSCADG APAWDYRYSR YPHQHKQLKH PHDQSIATYR GHTVLRTLIR CYFSPSYSTG QKYIYTGSYD
401: SNVCIYDVVS GSQVAKLKWH QMAIRDCSWH PFEPTLVSSS WDGRVVKWTS ARDEGASDVD

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.