Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67127 | Canola | mitochondrion | 19.88 | 95.15 |
| CDY72277 | Canola | cytosol, nucleus | 37.12 | 93.37 |
| CDY17974 | Canola | nucleus | 90.26 | 90.63 |
| Bra000849.1-P | Field mustard | nucleus | 89.66 | 90.2 |
| CDX90908 | Canola | nucleus | 89.66 | 90.02 |
| Bra034178.1-P | Field mustard | cytosol | 92.29 | 89.22 |
| CDY22095 | Canola | cytosol | 92.09 | 89.02 |
| CDX91264 | Canola | cytosol | 62.47 | 84.15 |
| VIT_07s0104g00900.t01 | Wine grape | cytosol | 75.46 | 76.54 |
| KRH31954 | Soybean | cytosol | 73.02 | 73.02 |
| Solyc06g008880.2.1 | Tomato | nucleus | 69.78 | 72.57 |
| GSMUA_Achr3P23760_001 | Banana | cytosol | 51.32 | 68.75 |
| PGSC0003DMT400016081 | Potato | nucleus | 63.89 | 67.45 |
| GSMUA_Achr10P... | Banana | cytosol | 61.87 | 63.28 |
| Os05t0144100-01 | Rice | cytosol, nucleus | 42.19 | 63.22 |
| KRH71501 | Soybean | cytosol | 43.81 | 62.97 |
| HORVU1Hr1G060850.2 | Barley | cytosol | 40.16 | 62.26 |
| TraesCS1D01G254400.1 | Wheat | nucleus | 57.81 | 62.23 |
| TraesCS1A01G255000.1 | Wheat | nucleus | 57.81 | 62.23 |
| TraesCS1B01G263400.2 | Wheat | nucleus | 57.2 | 61.44 |
| Os05t0407200-01 | Rice | nucleus | 57.0 | 60.69 |
| KXG21980 | Sorghum | cytosol | 55.98 | 60.0 |
| Zm00001d010305_P004 | Maize | cytosol | 55.98 | 60.0 |
| TraesCS1D01G088200.1 | Wheat | nucleus | 55.17 | 57.63 |
| TraesCS1A01G086800.2 | Wheat | nucleus | 54.77 | 57.32 |
| TraesCS1B01G083400.1 | Wheat | cytosol | 54.56 | 57.23 |
| TraesCS1D01G066000.1 | Wheat | cytosol | 54.56 | 57.23 |
| TraesCS1A01G065300.2 | Wheat | cytosol | 54.16 | 56.81 |
| TraesCS1B01G105200.2 | Wheat | mitochondrion, nucleus | 54.36 | 56.78 |
| HORVU0Hr1G000250.10 | Barley | cytosol | 26.57 | 56.22 |
| HORVU1Hr1G018790.5 | Barley | cytosol | 55.38 | 54.6 |
| KXG21285 | Sorghum | cytosol, mitochondrion, nucleus | 52.94 | 53.7 |
| Zm00001d010892_P013 | Maize | plastid | 53.75 | 52.17 |
| CDY21934 | Canola | plastid | 92.49 | 47.8 |
| Os01t0383700-01 | Rice | nucleus | 10.55 | 43.33 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:828111 | UniProt:A0A178USS0 | ProteinID:AEE82261.1 | ProteinID:AEE82262.1 |
| ProteinID:ANM66757.1 | ArrayExpress:AT4G03020 | EnsemblPlantsGene:AT4G03020 | RefSeq:AT4G03020 | TAIR:AT4G03020 | RefSeq:AT4G03020-TAIR-G |
| EnsemblPlants:AT4G03020.1 | TAIR:AT4G03020.1 | EMBL:AY099735 | Unigene:At.34236 | EMBL:BT000357 | InterPro:DCAF11/LEC14B |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| RefSeq:NP_001190666.1 | RefSeq:NP_001328634.1 | RefSeq:NP_192211.2 | ProteinID:OAO97019.1 | PFAM:PF00400 | PIRSF:PIRSF038135 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19847 | PANTHER:PTHR19847:SF15 | UniProt:Q8LPI5 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00000AC602 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
Coordinates
chr4:-:1331399..1335463
Molecular Weight (calculated)
55415.6 Da
IEP (calculated)
6.728
GRAVY (calculated)
-0.489
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.