CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11292	Soybean	cytosol	96.84	84.87
GSMUA_Achr3P23760_001	Banana	cytosol	52.21	67.39
KRH31954	Soybean	cytosol	69.89	67.34
PGSC0003DMT400016081	Potato	nucleus	65.47	66.6
TraesCS1A01G255000.1	Wheat	nucleus	58.32	60.48
Os05t0407200-01	Rice	nucleus	58.95	60.48
TraesCS1D01G254400.1	Wheat	nucleus	58.11	60.26
TraesCS1B01G263400.2	Wheat	nucleus	58.11	60.13
GSMUA_Achr10P...	Banana	cytosol	60.84	59.96
KRH71501	Soybean	cytosol	43.16	59.77
HORVU1Hr1G060850.2	Barley	cytosol	40.0	59.75
Os05t0144100-01	Rice	cytosol, nucleus	41.26	59.57
Zm00001d010305_P004	Maize	cytosol	57.47	59.35
KXG21980	Sorghum	cytosol	57.26	59.13
TraesCS1D01G088200.1	Wheat	nucleus	55.37	55.72
TraesCS1B01G105200.2	Wheat	mitochondrion, nucleus	55.37	55.72
TraesCS1A01G086800.2	Wheat	nucleus	55.16	55.63
TraesCS1B01G083400.1	Wheat	cytosol	53.68	54.26
TraesCS1D01G066000.1	Wheat	cytosol	53.47	54.04
TraesCS1A01G065300.2	Wheat	cytosol	53.26	53.83
HORVU0Hr1G000250.10	Barley	cytosol	26.11	53.22
HORVU1Hr1G018790.5	Barley	cytosol	55.58	52.8
KXG21285	Sorghum	cytosol, mitochondrion, nucleus	52.63	51.44
Zm00001d010892_P013	Maize	plastid	52.84	49.41
Os01t0383700-01	Rice	nucleus	10.32	40.83

Protein Annotations

EntrezGene:100820565	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02008332	InterPro:DCAF11/LEC14B	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_13G213100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1M199	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH20977	ProteinID:KRH20977	ProteinID:KRH20977.1	ProteinID:KRH20978.1
PFAM:PF00400	PIRSF:PIRSF038135	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19847
PANTHER:PTHR19847:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233BF29	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:32664808..32670974

Molecular Weight (calculated)

53003.4 Da

IEP (calculated)

7.231

GRAVY (calculated)

-0.395

Length

475 amino acids

Sequence
(BLAST)

001: MSRLNKNKSI CSDGSASNES SSSGITGERD DHLDHEIAQL TKLRSSPHEL LGCVVPGRMR LPVSTVRMLV GREGNYSGRG RFSSADGCHV LSRYLPTKGP
101: WIVGRMKSRA YVSQFSADGS LLIAGFQGSH IRIYDVDRGW KVKKDISARM LRWTVTDTSL SPDQLYLVYA SMSPIIHIVT VGSGTIESIA NVTEIHYGLN
201: FSSDNGDDEF GIFSVKFSTD GRELVAGTSD CSICVYDLGA DKLSLRIPAH QSDVNTVCFA DESGHLIYSG SDDSFIKVWD RRCFVAKGQP AGILMGHLEG
301: ITFIDSRGDG RYLISNGKDQ TTKLWDIRKM SSNAINLGLG DDEWDYRWMD YPEYARNLKH PHDQSLATYK GHSVLRTLVR CYFSPSYSTG QKYIYTGSSD
401: SSVYIYDLVS GAQVAKLDHH EAPVRDCSWH PYYPMMISSA WDGDVVRWEF PGSDEAPASP NKREGRIRRR NLLYL

Best Arabidopsis Sequence Match ( AT4G03020.1 )
(BLAST)

001: MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR
101: FSAADCCHML SRYLPTKGPW LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS PDQRNLVYAS MSPIVHIVDV
201: GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD
301: RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL
401: IRCYFSPAHS TGQKYIYTGS NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI MSKKRVRRRH FYY

Arabidopsis Description

Putative WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q8LPI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.