CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29830.1	CDY68484	AT4G05420.1	18223036
AT4G29830.1	CDY69266	AT4G05420.1	18223036
AT4G29830.1	CDY69930	AT4G05420.1	18223036
AT4G29830.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011139.1-P	Field mustard	cytosol	99.69	99.69
CDX68590	Canola	cytosol	99.38	99.38
AT4G29830.1	Thale cress	cytosol	97.51	97.51
CDY03567	Canola	cytosol	97.51	97.51
CDY14200	Canola	cytosol	97.2	97.2
VIT_11s0016g01730.t01	Wine grape	cytosol	82.24	82.24
KRH02663	Soybean	cytosol, nucleus	79.13	79.13
GSMUA_Achr2P01810_001	Banana	cytosol	77.88	77.88
KRH19247	Soybean	cytosol, endoplasmic reticulum	77.57	77.57
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	64.49	69.7
Os11t0660300-01	Rice	cytosol	70.09	69.66
PGSC0003DMT400000871	Potato	cytosol	69.78	69.35
PGSC0003DMT400041481	Potato	cytosol	69.78	69.35
Solyc12g009030.1.1	Tomato	cytosol, nucleus	69.47	69.04
TraesCS4D01G145700.1	Wheat	cytosol	69.16	68.94
Solyc07g041080.2.1	Tomato	cytosol, nucleus	68.85	68.42
TraesCS4B01G144300.1	Wheat	cytosol	68.54	68.32
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	68.54	68.32
EES08930	Sorghum	cytosol	67.91	67.7
HORVU4Hr1G033170.1	Barley	cytosol	66.98	62.87
CDY11502	Canola	cytosol	19.0	17.63
CDX76728	Canola	cytosol	18.69	17.34
CDY57442	Canola	cytosol	10.9	15.91
CDX87098	Canola	nucleus	28.04	13.47
CDY19814	Canola	nucleus	27.73	13.32
CDY05473	Canola	nucleus	27.1	13.06
CDY05378	Canola	nucleus	26.79	12.95
CDY18648	Canola	cytosol	22.43	12.59
CDX79933	Canola	nucleus	16.2	12.12
CDY23845	Canola	nucleus	16.2	12.09
CDX81324	Canola	cytosol	22.74	11.89
CDY41854	Canola	cytosol	18.38	10.85
CDY06918	Canola	cytosol, nucleus, peroxisome	15.89	10.52
CDY14776	Canola	mitochondrion	16.2	9.42
CDX77335	Canola	cytosol	11.21	8.53
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	21.5	7.87
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	21.18	7.83
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	21.18	7.83
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	20.87	7.69
CDY54973	Canola	nucleus	21.18	7.3
CDY22910	Canola	nucleus	21.18	7.3
CDY57444	Canola	cytosol, mitochondrion	4.36	4.83
CDY12836	Canola	extracellular, vacuole	1.25	4.71
CDY12834	Canola	endoplasmic reticulum, extracellular	1.87	3.23
CDY72066	Canola	cytosol	0.62	1.77
CDY43370	Canola	cytosol	0.62	1.77
CDY40782	Canola	cytosol	0.62	1.77
CDY27109	Canola	cytosol	0.62	1.77
CDX92625	Canola	cytosol	0.62	1.77

Protein Annotations

MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	UniProt:A0A078I1R4	InterPro:Apc4_WD40_dom	EnsemblPlants:CDY43529
ProteinID:CDY43529	ProteinID:CDY43529.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00076815001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44090	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EEDBEE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaA01g07150DBnaA01g07150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1R4]

Coordinates

chrLK032560:+:140565..141815

Molecular Weight (calculated)

34177.3 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.084

Length

321 amino acids

Sequence
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEERP ALLLTGSLDE TVKLWRADEL DLVRTNTGHS LGVAAVAAHP SGIIAASSSL DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPEAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDARVLFSGS DDGHVNVHDA EGKTLVGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.