CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79933	Canola	nucleus	96.51	96.74
Bra004625.1-P	Field mustard	nucleus	97.44	85.69
CDY06918	Canola	cytosol, nucleus, peroxisome	90.23	80.0
AT2G05720.1	Thale cress	cytosol	50.93	79.35
CDY14776	Canola	mitochondrion	91.16	71.01
GSMUA_Achr11P...	Banana	nucleus	57.91	56.98
Solyc04g016510.2.1	Tomato	nucleus	63.26	55.74
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	58.84	50.2
Os03t0355400-00	Rice	cytosol, nucleus, plastid	60.93	50.0
Os03t0355200-00	Rice	cytosol, nucleus, plastid	60.93	50.0
KRH72083	Soybean	nucleus	66.28	50.0
KRH31616	Soybean	nucleus	66.28	50.0
EER94850	Sorghum	plastid	60.23	49.81
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	58.6	49.51
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	58.6	49.51
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	58.37	49.31
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	20.47	48.89
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	66.28	48.89
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	58.14	48.73
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	60.23	47.01
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	57.67	45.76
TraesCS2A01G175200.1	Wheat	plastid	57.44	44.67
VIT_08s0007g05930.t01	Wine grape	nucleus	67.67	44.16
OQU89577	Sorghum	plastid	21.63	43.66
OQU91217	Sorghum	plastid	24.42	42.68
HORVU2Hr1G032990.1	Barley	cytosol	32.33	35.73
CDY57442	Canola	cytosol	8.6	16.82
CDY43529	Canola	cytosol	12.09	16.2
CDX68590	Canola	cytosol	11.86	15.89
CDY03567	Canola	cytosol	11.86	15.89
CDY14200	Canola	cytosol	11.86	15.89
CDY11502	Canola	cytosol	11.63	14.45
CDX76728	Canola	cytosol	11.16	13.87
CDY18648	Canola	cytosol	17.67	13.29
CDX81324	Canola	cytosol	18.6	13.03
CDY19814	Canola	nucleus	19.3	12.43
CDX87098	Canola	nucleus	19.07	12.28
CDY05378	Canola	nucleus	18.84	12.2
CDY05473	Canola	nucleus	18.84	12.16
CDY12834	Canola	endoplasmic reticulum, extracellular	4.42	10.22
CDX77335	Canola	cytosol	9.3	9.48
CDY57444	Canola	cytosol, mitochondrion	6.28	9.31
CDY41854	Canola	cytosol	11.16	8.82
CDY22910	Canola	nucleus	16.51	7.63
CDY54973	Canola	nucleus	16.28	7.52
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	15.12	7.46
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	14.88	7.37
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	14.88	7.37
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	14.88	7.3
CDY12836	Canola	extracellular, vacuole	1.16	5.88
CDY27109	Canola	cytosol	0.47	1.77
CDX92625	Canola	cytosol	0.47	1.77
CDY40782	Canola	cytosol	0.47	1.77
CDY43370	Canola	cytosol	0.47	1.77
CDY72066	Canola	cytosol	0.47	1.77

Protein Annotations

MapMan:16.4.1.3.2	Gene3D:2.130.10.10	GO:A0A078GBL0	UniProt:A0A078GBL0	EnsemblPlants:CDY23845	ProteinID:CDY23845
ProteinID:CDY23845.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00024262001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285	PFAM:PF00400
PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF50978	UniParc:UPI0004EDEA20	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaC04g01920DBnaC04g01920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBL0]

Coordinates

chrLK032150:+:128487..130225

Molecular Weight (calculated)

48417.3 Da

IEP (calculated)

6.214

GRAVY (calculated)

-0.527

Length

430 amino acids

Sequence
(BLAST)

001: MVRHPPLARP PAFRPPQNGG AKADDERYVI SEESRQVRER QERAMQELLR KRRAAAMAVP TNDKSVRGRL RRLGDAITLF GEREMERRAR LAQLMARLDI
101: GGQLDRLLRA YEEEVEDEEE EVQYLFFTEG PKELREARID IAKYSIKRAA VRVQRAKRRR DDPDEDVDAE TKWALKQAKG MVLDCSSFGD DRPLTGCSFS
201: RDGTILATCS LSGVTTLWEM PQVTNTIAIL KDHKERVTDV VFSPVDDCLA TASADRTAKL WKTDGTLLQT FEASSGLDSL ARVWDLRTGR SILAFQGHIK
301: PVLSVNFSPN GYHLASGGED SQCRIWDLRM RKSLYIIPAH ANLVSQVKYE PQEGYFLATA SYDMKVNIWS GRDFSLVKSL AGHESKVASL DITADSSCIA
401: TVSHDRTIKL WTSSSNEEED QGGETMDIDL

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.