Factsheet for TraesCS2D01G182600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	91.51	96.69
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	87.27	92.93
TraesCS2A01G175200.1	Wheat	plastid	92.99	91.14
EER94850	Sorghum	plastid	80.63	84.04
Os03t0355200-00	Rice	cytosol, nucleus, plastid	80.44	83.21
Os03t0355400-00	Rice	cytosol, nucleus, plastid	80.44	83.21
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	81.18	79.85
GSMUA_Achr11P...	Banana	nucleus	56.83	70.48
HORVU2Hr1G032990.1	Barley	cytosol	50.55	70.44
Solyc04g016510.2.1	Tomato	nucleus	56.83	63.11
Bra004625.1-P	Field mustard	nucleus	55.17	61.15
CDX79933	Canola	nucleus	45.94	58.04
CDY23845	Canola	nucleus	45.76	57.67
KRH31616	Soybean	nucleus	59.59	56.67
Bra016929.1-P	Field mustard	nucleus, plastid	56.64	56.33
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	60.15	55.92
KRH72083	Soybean	nucleus	58.3	55.44
AT2G41500.1	Thale cress	nucleus, plastid	55.72	54.51
AT2G05720.1	Thale cress	cytosol	26.94	52.9
CDY06918	Canola	cytosol, nucleus, peroxisome	47.23	52.78
VIT_08s0007g05930.t01	Wine grape	nucleus	61.25	50.38
CDY14776	Canola	mitochondrion	47.79	46.92
TraesCS7D01G435400.1	Wheat	cytosol	13.65	21.14
TraesCS7D01G435500.1	Wheat	cytosol	13.47	20.92
TraesCS4D01G145700.1	Wheat	cytosol	12.36	20.81
TraesCS5D01G324200.2	Wheat	nucleus	19.56	16.16
TraesCS7D01G496500.1	Wheat	nucleus	19.37	16.13
TraesCS2D01G235100.1	Wheat	nucleus	16.24	15.83
TraesCS2D01G446600.2	Wheat	mitochondrion	16.24	9.92
TraesCS7D01G500800.1	Wheat	mitochondrion	16.05	9.86

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285
PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500
SUPFAM:SSF158230	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS2D01G182600	EnsemblPlants:TraesCS2D01G182600.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:126982767..126984701

Molecular Weight (calculated)

59979.8 Da

IEP (calculated)

6.391

GRAVY (calculated)

-0.476

Length

542 amino acids

Sequence
(BLAST)

001: MQRLRCRLAR ITSPPAAERE EKKETSMENP RPLPPAITPP MAPLPVHPPI APVPVPVPPR APASTSAAAG GGDDDEVDYE VSDDHRAARE RHERAVQELL
101: QRRRAYAMAV PTNDSAVRAR LRRLGEPITL FGEGAMERRD RLRALMARLE AEGQFDRLLR AQEDERGASG DDDDEGTEQI KYPFFTEGTN QLLQARIDIA
201: MYSLPRAKAR VERAKRRLAD LDEDPEAEAA LVVKQAADFA LERSEIGDDR PLTGCSFSRD ASMLATSSWS GIVKVWSMPQ IAKIATLKGH TERATDVAFS
301: PVDNCLATAS ADKTAKLWNS DGSLLMSFDG HLDRLARLAF HPSGKYLGTA SFDKTWRLWD INTGTELLLQ EGHSRSVYGV SFHPDGSLAA SCGFDASARV
401: WDLRSGRLYC TLIGNVKPVL GVGFSPNGHL VATTSEDNFC RIWDLRTRQM LYSIPAHKSL ISHVKFEPQE GYYLATSSYD TKAALWSTRD YKPIKSLSGH
501: ESNVTSLDIS GDGQQIVTVS LDRTIKIWSC RGSARDNEME LD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.