Factsheet for TraesCS4D01G160600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	97.05	97.05
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	96.07	96.07
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	93.91	94.84
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	92.93	87.27
EER94850	Sorghum	plastid	86.05	84.23
Os03t0355200-00	Rice	cytosol, nucleus, plastid	85.46	83.02
Os03t0355400-00	Rice	cytosol, nucleus, plastid	85.46	83.02
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	85.66	79.13
GSMUA_Achr11P...	Banana	nucleus	62.48	72.77
Solyc04g016510.2.1	Tomato	nucleus	61.1	63.73
Bra004625.1-P	Field mustard	nucleus	59.33	61.76
CDX79933	Canola	nucleus	49.31	58.51
CDY23845	Canola	nucleus	49.31	58.37
Bra016929.1-P	Field mustard	nucleus, plastid	60.9	56.88
KRH31616	Soybean	nucleus	63.46	56.67
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	64.44	56.26
KRH72083	Soybean	nucleus	62.28	55.61
AT2G41500.1	Thale cress	nucleus, plastid	60.31	55.42
CDY06918	Canola	cytosol, nucleus, peroxisome	50.69	53.2
AT2G05720.1	Thale cress	cytosol	28.49	52.54
VIT_08s0007g05930.t01	Wine grape	nucleus	64.64	49.92
CDY14776	Canola	mitochondrion	51.08	47.1
TraesCS7D01G435400.1	Wheat	cytosol	14.54	21.14
TraesCS7D01G435500.1	Wheat	cytosol	14.34	20.92
TraesCS4D01G145700.1	Wheat	cytosol	12.97	20.5
TraesCS2D01G235100.1	Wheat	nucleus	17.49	16.01
TraesCS5D01G324200.2	Wheat	nucleus	20.43	15.85
TraesCS7D01G496500.1	Wheat	nucleus	20.24	15.82
TraesCS2D01G446600.2	Wheat	mitochondrion	16.31	9.36
TraesCS7D01G500800.1	Wheat	mitochondrion	16.11	9.3

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285
PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500
SUPFAM:SSF158230	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4D01G160600	EnsemblPlants:TraesCS4D01G160600.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:236934451..236939976

Molecular Weight (calculated)

56202.4 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.417

Length

509 amino acids

Sequence
(BLAST)

001: MSMENPGPLP PAITPPMAPL PVHPPIAPIP IPVPPSTSAA ADDDEVDYEV SDDHRAARER HERAVQELLQ RRRAYAMAVP TNDSAVRARL RRLGEPITLF
101: GEREMERRDR LRALMVRLEA DGQFDRLLRV QEDEQGAPGD DDDMEQIQYP FFTEGTNQLL QARVDIAMYS LPRAKARVDR AKRRLADLDE DPEAEADLVV
201: KQAGDFVLEC SEIGDDRPLT GCSFSRDASM LATSSWSGIL KVWSMPQITK IATLKGHTER ATDVAFSPVD NCLATASADK TAKLWNSDGS LLMSFDGHLD
301: RLARVAFHPS GKYLGTASFD KTWRLWDINT GTELLLQEGH SRSVYGVSFH PDGSLAASCG LDANARVWDL RSGRLYCTLI GHVKPVLGVG FSPNGHLVAT
401: ASEDNFCRIW DLRTRQMLYS IPAHKSLISH VKFEPQEGYY LATSSYDTKA AVXXXRDYKP IKCLAGHESK VTSLDISGDG QQIVTVSHDR TIKIWSCRGT
501: ARDNEMELD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.