Factsheet for VIT_08s0007g05930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g016510.2.1	Tomato	nucleus	60.39	81.56
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	67.98	76.84
KRH31616	Soybean	nucleus	66.31	76.67
GSMUA_Achr11P...	Banana	nucleus	50.68	76.43
KRH72083	Soybean	nucleus	65.55	75.79
Bra004625.1-P	Field mustard	nucleus	51.59	69.53
CDY23845	Canola	nucleus	44.16	67.67
CDX79933	Canola	nucleus	43.85	67.37
Bra016929.1-P	Field mustard	nucleus, plastid	55.39	66.97
EER94850	Sorghum	plastid	52.2	66.15
CDY06918	Canola	cytosol, nucleus, peroxisome	47.8	64.95
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	49.92	64.64
AT2G41500.1	Thale cress	nucleus, plastid	54.32	64.62
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	49.01	64.09
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	49.47	64.05
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	49.32	63.85
Os03t0355200-00	Rice	cytosol, nucleus, plastid	50.53	63.55
Os03t0355400-00	Rice	cytosol, nucleus, plastid	50.53	63.55
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	49.17	63.16
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.38	61.25
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	50.99	60.98
TraesCS2A01G175200.1	Wheat	plastid	49.62	59.13
AT2G05720.1	Thale cress	cytosol	24.73	59.06
CDY14776	Canola	mitochondrion	47.5	56.7
HORVU2Hr1G032990.1	Barley	cytosol	30.5	51.67
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	13.35	48.89
OQU89577	Sorghum	plastid	14.87	46.01
OQU91217	Sorghum	plastid	16.39	43.9
VIT_13s0084g00760.t01	Wine grape	plastid	3.79	22.73
VIT_08s0007g03360.t01	Wine grape	cytosol	11.68	22.38
VIT_11s0016g01730.t01	Wine grape	cytosol	9.41	19.31
VIT_18s0001g09610.t01	Wine grape	cytosol	6.22	18.72
VIT_07s0129g00690.t01	Wine grape	nucleus	16.54	18.26
VIT_04s0008g05780.t01	Wine grape	nucleus	16.69	16.27
VIT_18s0001g09600.t01	Wine grape	cytosol	11.38	13.71
VIT_16s0039g01690.t01	Wine grape	cytosol	12.59	9.22
VIT_08s0007g04690.t01	Wine grape	nucleus	12.9	8.93
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	1.82	8.33

Protein Annotations

Gene3D:1.10.720.150	EntrezGene:100243602	wikigene:100243602	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	EMBL:AM434914
ProteinID:CAN64891	ProteinID:CAN64891.1	ProteinID:CCB55284	ProteinID:CCB55284.1	ncoils:Coil	UniProt:F6HLM8
EMBL:FN595991	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0017070	GO:GO:0030621
GO:GO:0046540	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285	EntrezGene:LOC100243602
wikigene:LOC100243602	PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320
SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF50978	TIGR:TC63543	UniParc:UPI0002108AFE	ArrayExpress:VIT_08s0007g05930
EnsemblPlantsGene:VIT_08s0007g05930	EnsemblPlants:VIT_08s0007g05930.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002276914	RefSeq:XP_002276914.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:19821768..19828474

Molecular Weight (calculated)

72914.7 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.385

Length

659 amino acids

Sequence
(BLAST)

001: MKSDGAQIQK WKSRRRRAGK AEAATTHLGE RRSPHFSASG CARNFEWLEL RSEAAAFFKE ESSAGVIGLI QLLLILSFPL LGMDVDEENP VSVSLAEPSA
101: AVTDDQTPVS TIDPTPLPAM QPIIPSLVPP PIVPPIAPIP SVSAPILRPL APLPVRPPVL RPPLPQNGEM RASDSDSDRD DSGRAQAASG SAVEYEISEE
201: SRQFRERQEK AKQEFLMKRR ASALAVPTND MAVRTRLRRL GEPITLFGER EMERRDRLRM IMAKLDAEGQ LEKLMKAHEE EEAAAPVAME EVEEETLQYP
301: FYTEGSKSLL EARVEIAKYS IKRAASRLYR ARRKRDDPDE DLDAEMDWVL KEAGSLVLDC SEIGDDRPLS GCSFSHDGKL LAACALSGVA KIWSMPQVNK
401: VSALKGHTER ATDVAFSPAL NHLATASADR TARLWNSEGS LLKTFEGHLD RLARIAFHPS GKYLGTASFD KTWRLWDVET GEELLLQEGH SRSVYGISFH
501: RDGSLAASCG LDALGRVWDL RSGRSILALE GHVKPVLGIC FSPNGYHLAT GAEDNTCRIW DLRKKKSLYV IPAHSNLVSQ VKFEPQEGYF LVTASYDMTA
601: KVWSARDFKP VKTLSGHEAK VTSLDITEDG HCIATVSHDR TIKLWSSAEI EKEKAMDID

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.