Factsheet for VIT_11s0016g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29830.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68590	Canola	cytosol	82.87	82.87
KRH02663	Soybean	cytosol, nucleus	82.87	82.87
Bra011139.1-P	Field mustard	cytosol	82.55	82.55
CDY43529	Canola	cytosol	82.24	82.24
AT4G29830.1	Thale cress	cytosol	82.24	82.24
CDY03567	Canola	cytosol	81.62	81.62
KRH19247	Soybean	cytosol, endoplasmic reticulum	81.62	81.62
CDY14200	Canola	cytosol	81.31	81.31
PGSC0003DMT400000871	Potato	cytosol	71.96	71.52
PGSC0003DMT400041481	Potato	cytosol	71.65	71.21
Solyc12g009030.1.1	Tomato	cytosol, nucleus	71.34	70.9
Solyc07g041080.2.1	Tomato	cytosol, nucleus	71.03	70.59
VIT_13s0084g00760.t01	Wine grape	plastid	21.81	63.64
VIT_08s0007g03360.t01	Wine grape	cytosol	19.0	17.73
VIT_18s0001g09610.t01	Wine grape	cytosol	11.21	16.44
VIT_04s0008g05780.t01	Wine grape	nucleus	27.1	12.87
VIT_07s0129g00690.t01	Wine grape	nucleus	20.87	11.22
VIT_18s0001g09600.t01	Wine grape	cytosol	16.51	9.69
VIT_08s0007g05930.t01	Wine grape	nucleus	19.31	9.41
VIT_16s0039g01690.t01	Wine grape	cytosol	20.56	7.33
VIT_08s0007g04690.t01	Wine grape	nucleus	20.25	6.83
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	1.25	2.78

Protein Annotations

EntrezGene:100257752	wikigene:100257752	MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	EMBL:AM451482
InterPro:Apc4_WD40_dom	ProteinID:CAN67687	ProteinID:CAN67687.1	ProteinID:CBI27866	ProteinID:CBI27866.3	UniProt:D7TCK8
EMBL:FN595756	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100257752	wikigene:LOC100257752	PFAM:PF00400	PFAM:PF12894
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44090	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00015C861F	ArrayExpress:VIT_11s0016g01730	EnsemblPlantsGene:VIT_11s0016g01730	EnsemblPlants:VIT_11s0016g01730.t01	unigene:Vvi.18140
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002280723
RefSeq:XP_002280723.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:1381223..1386829

Molecular Weight (calculated)

34280.6 Da

IEP (calculated)

5.982

GRAVY (calculated)

-0.030

Length

321 amino acids

Sequence
(BLAST)

001: MKLAGLKSIE NAHDESVWAA AWVPATESRP ALLLTGSLDE TVKLWMPDEL VLQQNNTGHC LGVVAVAAHP SGIIAASASL DSFVRVFDVD TNATIATLEA
101: PPSEVWQMQF DPKGSILAVA GGSSASIKLW DTATWKLIDT LAIPRPESSK PTDRGGNKKF VLSVAWSPDG RRLACGSMDG TISIFDVNRA KFLHHLEGHY
201: MPVRSLVYSP VDPRVLFSAS DDGHVHMYDA EGKSLIGAMS GHASWVLSVD VSPDGAAIAT GSSDKTVRLW DLNMRAAVQT MSNHADQVWG VAFRPPGGAG
301: VRAGRLASVS DDKSISLYDY S

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.