CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29830.1	KRH25071	AT4G05420.1	18223036
AT4G29830.1	KRH43086	AT4G05420.1	18223036
AT4G29830.1	KRH59212	AT4G05420.1	18223036
AT4G29830.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02663	Soybean	cytosol, nucleus	97.82	97.82
VIT_11s0016g01730.t01	Wine grape	cytosol	81.62	81.62
CDX68590	Canola	cytosol	78.19	78.19
Bra011139.1-P	Field mustard	cytosol	77.88	77.88
CDY03567	Canola	cytosol	77.57	77.57
CDY43529	Canola	cytosol	77.57	77.57
GSMUA_Achr2P01810_001	Banana	cytosol	77.57	77.57
CDY14200	Canola	cytosol	77.26	77.26
AT4G29830.1	Thale cress	cytosol	77.26	77.26
Os11t0660300-01	Rice	cytosol	71.03	70.59
TraesCS4D01G145700.1	Wheat	cytosol	70.09	69.88
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	64.49	69.7
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	69.47	69.25
TraesCS4B01G144300.1	Wheat	cytosol	69.16	68.94
PGSC0003DMT400041481	Potato	cytosol	69.16	68.73
EES08930	Sorghum	cytosol	68.85	68.63
PGSC0003DMT400000871	Potato	cytosol	68.85	68.42
Solyc12g009030.1.1	Tomato	cytosol, nucleus	68.54	68.11
Solyc07g041080.2.1	Tomato	cytosol, nucleus	67.91	67.49
HORVU4Hr1G033170.1	Barley	cytosol	67.91	63.74
KRG99418	Soybean	cytosol, extracellular, plastid	5.3	19.54
KRH04500	Soybean	cytosol	15.26	17.5
KRH67917	Soybean	cytosol	18.69	17.49
KRH15679	Soybean	cytosol	6.85	17.32
KRH33352	Soybean	plastid	11.53	14.57
KRH04498	Soybean	mitochondrion	11.84	14.56
KRG94333	Soybean	cytosol	9.03	14.36
KRH52333	Soybean	nucleus	25.23	12.22
KRH28415	Soybean	nucleus	20.87	12.01
KRH61671	Soybean	nucleus	24.92	11.96
KRH05348	Soybean	nucleus	23.36	11.4
KRH61363	Soybean	nucleus	19.63	11.09
KRH72083	Soybean	nucleus	19.31	10.88
KRH31616	Soybean	nucleus	19.31	10.88
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	14.95	10.71
KRH58014	Soybean	nucleus	20.56	10.58
KRH52050	Soybean	cytosol, nucleus, peroxisome	19.31	9.7
KRH03286	Soybean	nucleus	20.87	7.62
KRG96051	Soybean	nucleus	21.81	7.42
KRH67774	Soybean	nucleus, plastid	21.5	7.32
KRH57076	Soybean	plasma membrane	17.45	6.62
KRH04503	Soybean	nucleus	5.3	5.09

Protein Annotations

EntrezGene:100790793	MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	EMBL:ACUP02008171	InterPro:Apc4_WD40_dom
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_13G107300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LY25
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH19247	ProteinID:KRH19247	ProteinID:KRH19247.1
PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44090	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233BC19	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:22175229..22178225

Molecular Weight (calculated)

34418.6 Da

IEP (calculated)

5.803

GRAVY (calculated)

-0.056

Length

321 amino acids

Sequence
(BLAST)

001: MKLSGLKSVE NAHDDSVWAV TWVPATANRP PLLLTGSLDE TVRLWRSDDL VLELTNTGHC LGVASVAAHP LGSVVASSSL DSFVRVFDVD SNATIATLEA
101: PPSEVWQMRF DPKGAILAVA GGGSASVKLW DTSSWELVAT LSIPRPEGQK PTDKSGSKKF VLSIAWSPDG KRLACGSMDG TISVFDVPRA KFLHHLEGHF
201: MPVRSLVYSP YDPRLLFTAS DDGNVHMYDA EGKALIGTMS GHASWVLCVD VSPDGAAIAT GSSDRSVRLW DLNMRASVQT MSNHSDQVWG VAFRSPGGSD
301: VRGVRLASVS DDKSISLYDY S

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.