CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009959	Potato	cytosol	23.44	76.09
KRG94333	Soybean	cytosol	23.88	52.97
KRH57076	Soybean	plasma membrane	92.63	49.05
KRH03286	Soybean	nucleus	95.98	48.92
VIT_16s0039g01690.t01	Wine grape	cytosol	77.9	38.78
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	70.76	36.19
Solyc03g097160.2.1	Tomato	nucleus	70.31	36.17
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.87	36.06
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.42	35.83
GSMUA_Achr11P...	Banana	mitochondrion	69.42	33.77
HORVU2Hr1G106110.11	Barley	mitochondrion	66.07	33.6
TraesCS7B01G423400.1	Wheat	nucleus	65.85	33.52
TraesCS2B01G468100.1	Wheat	nucleus	66.07	33.37
TraesCS7D01G500800.1	Wheat	mitochondrion	65.62	33.33
TraesCS2A01G447700.1	Wheat	mitochondrion	65.85	33.33
TraesCS2D01G446600.2	Wheat	mitochondrion	65.85	33.26
Os04t0592700-01	Rice	nucleus	65.85	33.11
EES12762	Sorghum	cytosol	65.18	32.92
PGSC0003DMT400034226	Potato	cytosol	18.08	32.27
Zm00001d002483_P002	Maize	mitochondrion	64.96	31.98
Zm00001d026195_P002	Maize	cytosol	64.96	31.53
KRH02663	Soybean	cytosol, nucleus	11.16	15.58
KRH19247	Soybean	cytosol, endoplasmic reticulum	10.71	14.95
KRH33352	Soybean	plastid	7.81	13.78
KRH67917	Soybean	cytosol	10.27	13.41
KRH04500	Soybean	cytosol	8.26	13.21
KRH61671	Soybean	nucleus	17.63	11.81
KRH52333	Soybean	nucleus	17.41	11.76
KRH28415	Soybean	nucleus	14.51	11.65
KRH05348	Soybean	nucleus	16.96	11.55
KRH61363	Soybean	nucleus	14.06	11.09
KRH31616	Soybean	nucleus	13.39	10.53
KRH58014	Soybean	nucleus	14.51	10.42
KRH72083	Soybean	nucleus	13.17	10.35
KRH04498	Soybean	mitochondrion	6.03	10.34
KRH52050	Soybean	cytosol, nucleus, peroxisome	14.06	9.86
KRH67774	Soybean	nucleus, plastid	19.87	9.44
KRG96051	Soybean	nucleus	19.87	9.43
KRH04503	Soybean	nucleus	6.25	8.38
KRG99418	Soybean	cytosol, extracellular, plastid	1.34	6.9
KRH15679	Soybean	cytosol	1.34	4.72
CDY12834	Canola	endoplasmic reticulum, extracellular	1.12	2.69

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	UniProt:A0A0R0E3J7	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_U040100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRG88454
ProteinID:KRG88454	ProteinID:KRG88454.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006ED6C5A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chrscaffold_581:-:522..6129

Molecular Weight (calculated)

48999.1 Da

IEP (calculated)

4.940

GRAVY (calculated)

0.022

Length

448 amino acids

Sequence
(BLAST)

001: MEPLRLKTNY RCVPALQQFY TGGPFVVSSD SSFIACACGE SIKIVDSATA AIRSTLDADS ESFTALALSP DDRLLFSSGH SRQIRVWDLS TLKCVRSWKG
101: HEGPVMCMTC HPSGGLLATG GADRKVLVWD VDGGYCTHYF KDQGLLCVTA DQQFLFYSLD FTEQLLQLNL TKRLVGYNEE IVDMKFIGDD EKFLALATNL
201: EQIRVYDLSS MSCSYVLSDH TEIVLCLDSC VSSSGNPLIV TGSKDNSVRL WEPESANCIG VGIGHMGAVG VVAWGNDKRD FFVSGSSDHT LKVWSMDGLL
301: DNMTVPINLK AKAVVAAHDK DINSVAVAPN DSLVCSGSQD RTACVWRLPD LVSVVVFKGH KRGIWSVEFS PVDQCVVTAS GDKTIRIWAI SDGSCLKTFE
401: GHTSSADGLV KLWTVKTNEC VATYDHHEDK VPVDPLIYLF SDDFSFNS

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.