Factsheet for Solyc03g097160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009959	Potato	cytosol	13.78	86.96
PGSC0003DMT400034226	Potato	cytosol	20.44	70.92
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	36.17	70.31
VIT_16s0039g01690.t01	Wine grape	cytosol	71.41	69.11
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	65.33	64.95
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	64.64	64.86
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.52	64.75
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	64.29	64.52
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	64.41	64.41
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.06	64.29
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	64.52	64.08
KRH03286	Soybean	nucleus	63.72	63.14
KRH57076	Soybean	plasma membrane	60.16	61.94
TraesCS2B01G468100.1	Wheat	nucleus	61.08	59.98
TraesCS7B01G423400.1	Wheat	nucleus	60.39	59.77
TraesCS7D01G500800.1	Wheat	mitochondrion	60.39	59.64
TraesCS2A01G447700.1	Wheat	mitochondrion	60.51	59.55
TraesCS2D01G446600.2	Wheat	mitochondrion	60.62	59.53
HORVU2Hr1G106110.11	Barley	mitochondrion	60.16	59.48
GSMUA_Achr11P...	Banana	mitochondrion	62.46	59.07
Os04t0592700-01	Rice	nucleus	60.39	59.03
EES12762	Sorghum	cytosol	59.93	58.85
Zm00001d002483_P002	Maize	mitochondrion	59.93	57.36
Zm00001d026195_P002	Maize	cytosol	59.59	56.23
Solyc09g074400.2.1	Tomato	cytosol	8.73	21.65
Solyc12g009030.1.1	Tomato	cytosol, nucleus	7.69	20.74
Solyc07g041080.2.1	Tomato	cytosol, nucleus	6.66	17.96
Solyc06g065700.2.1	Tomato	nucleus	13.78	17.52
Solyc12g049100.1.1	Tomato	cytosol	7.0	17.28
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.87	17.23
Solyc04g016510.2.1	Tomato	nucleus	9.53	17.01
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	7.12	16.76
Solyc12g088620.1.1	Tomato	cytosol	9.87	16.48
Solyc12g088630.1.1	Tomato	cytosol	9.64	16.44
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	7.81	16.23
Solyc04g078320.2.1	Tomato	cytosol	10.91	16.05
Solyc09g009410.2.1	Tomato	cytosol, nucleus	6.2	15.52
Solyc12g088570.1.1	Tomato	cytosol	6.2	14.84
Solyc10g039190.1.1	Tomato	nucleus	16.07	14.74

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0000462	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009880
GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034388	GO:GO:0051301	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BJD3	PFAM:PF00400	PFAM:PF08625	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:SSU_processome_Utp13	EnsemblPlantsGene:Solyc03g097160.2	EnsemblPlants:Solyc03g097160.2.1
UniParc:UPI00027681A9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:59481082..59490562

Molecular Weight (calculated)

96078.0 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.159

Length

871 amino acids

Sequence
(BLAST)

001: MASVSLKKSY KCMQSLQQFY TGGPYAVASD ESFLVCACDE KIKIVDLSNA SIKSTIEGDS EAVTALALSP NNNILFSASH SRQIRVWNLS TLECIRSWKG
101: HEGPVMGMAS DASGGLLVTA GADRKVLVWD VDGGFCTHYF KGHKGVVTSI MFHPDPNRLL VFSGGDDGSV RVWDLIGKKC LSTLEKHQSA ITSMAISEDG
201: WTLLSAGRDK VVNLWNLHNY GCMTTIPMFE SLEALCIIGP ESPFAASLSS LTYLQTKKRS DVPSINFITV GERGLVRIWS ADRALCLFEQ KSSDIAVSSG
301: DEDSKRGFIS ALLMPASQEL LCVTADQQFF LYCPEESEGG LNLVLRKRFI GYNEEIVDMK FLGDEEQFLA VSTSVEQVRV YDLTSMSCSY VLAGHTDVIL
401: CLDTCLSSSG RTLIVTGSKD NTVRLWDCQS KACVGVGIGH MGAVGAVAFS KKQRNFFVSG SSDRTLKVWN MDSVSDNNEE VLTLKAKAVV AAHDKDINCL
501: AVAPNDSLVC SGSQDRTACI WRLPDLVSVV ALKGHKRGIW SVEFSPVDQC VMTASGDKTI KIWAISDGTC LKTFEGHQSS VLRASFLTHG TQIVSCGADC
601: MVKLWTVKTN ECIATYDQHE EKIWALAVGK KTEMLATGGG DAVINLWHDS TALDKEEAFR KEEEGVLRGQ ELENALIDAD YIRAIRIAFE LRRPHKLLEL
701: FRELCRKNDM DDQIGKAIKA LGKEELQLLL EYIREWNTKP KFCQIAQYVL SRAYSVLPAT EIVEVPGYKE LLNGLIPYTQ RHFNRLDRLA RSLCILQYTS
801: AAMSVIQPEG NEGKLEGKDA KLPNAADIDE LSDITSVEEE QHHKELKEQK SSKKRKNKSR HSASKKVKGG D

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.