Factsheet for Solyc04g078320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 3
plastid 1
cytosol 2
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.64	71.94
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.43	71.08
Solyc12g088630.1.1	Tomato	cytosol	60.98	70.65
Os07t0405100-01	Rice	cytosol	65.88	70.27
Zm00001d025048_P003	Maize	cytosol	66.05	69.7
TraesCS2A01G227200.3	Wheat	cytosol	65.71	69.59
TraesCS2D01G235100.1	Wheat	nucleus	65.2	69.42
TraesCS2B01G255700.1	Wheat	nucleus	65.2	69.18
GSMUA_Achr6P34780_001	Banana	cytosol	54.73	69.08
Solyc12g088620.1.1	Tomato	cytosol	60.64	68.77
KRH61363	Soybean	nucleus	65.37	68.13
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.97	67.78
HORVU2Hr1G053480.9	Barley	mitochondrion	63.18	66.79
Solyc12g049100.1.1	Tomato	cytosol	39.7	66.57
EES11818	Sorghum	nucleus, plastid	66.55	65.45
Solyc12g088570.1.1	Tomato	cytosol	40.2	65.38
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.86	64.21
KRH52050	Soybean	cytosol, nucleus, peroxisome	65.54	60.72
GSMUA_Achr6P34790_001	Banana	extracellular	14.19	53.85
Solyc09g074400.2.1	Tomato	cytosol	15.2	25.64
Solyc12g009030.1.1	Tomato	cytosol, nucleus	12.16	22.29
Solyc07g041080.2.1	Tomato	cytosol, nucleus	11.82	21.67
Solyc09g009410.2.1	Tomato	cytosol, nucleus	12.67	21.55
Solyc04g016510.2.1	Tomato	nucleus	17.06	20.7
Solyc06g065700.2.1	Tomato	nucleus	17.74	15.33
Solyc03g097160.2.1	Tomato	nucleus	16.05	10.91
Solyc10g039190.1.1	Tomato	nucleus	16.72	10.42

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118
GO:GO:0003674	GO:GO:0003714	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4BUR9	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320
SMART:SM00667	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc04g078320.2	EnsemblPlants:Solyc04g078320.2.1	UniParc:UPI0002766A2F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:63071074..63081872

Molecular Weight (calculated)

67317.8 Da

IEP (calculated)

5.597

GRAVY (calculated)

-0.785

Length

592 amino acids

Sequence
(BLAST)

001: MISLTSSELN YLVFRYLQES GFTHSAFALG YEAGINKSPI DGNLVPPGGL VTFVQKGIQY LELEANLTND DTDMDEDFQF IQPIDLITKD VYELHKIIKE
101: KKEKLRKDKP RGKDKDINER ETEHEREPAR EREKEKQQKE KERERERERE RERERERERE RERERERIEK DKEREKNKDK EKAREDLKPR EDLMDTKPNG
201: DKEIVRHEEN GKAGDPEPME ICTSSTALPC EIPSSDLLIL EGHTSEVFAC AWSPDGSLLA SGSGDSTARI WTIGDGPCNS HMQNGPVNVM VLKHFKGRTN
301: EKSKDVTTLE WNGEGHLLAT GSYDGQARIW NREGELVNTL IKHKGPIFSL KWNKKGDYLL SGSVDKTAIV WDVKSGEWKQ QFEFHSAPTL DVDWRNNNSF
401: ATCSTDNMIY VCKVGESRPL KAFSGHQSEV NAIKWDPSGS LLASCSDDTT AKIWSVKQDT CLHDFREHAK EIYTIRWSPC GPGTSNPNQQ LLLASASFDS
501: TVKLWDVEIG RLVHSLNGHR DPVYSVAFSP NSEYLATGSL DRCLNIWSVK DAKIIKTYSG NGGIFEVCWN KEGSKVAACF ADNVVCVFDV RM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.