Factsheet for Solyc12g049100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	81.3	81.3
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.49	56.76
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.49	50.12
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.71	47.9
GSMUA_Achr6P34790_001	Banana	extracellular	20.96	47.44
Solyc12g088570.1.1	Tomato	cytosol	48.16	46.7
Solyc12g088620.1.1	Tomato	cytosol	67.71	45.79
Solyc12g088630.1.1	Tomato	cytosol	64.87	44.81
Os07t0405100-01	Rice	cytosol	63.74	40.54
Zm00001d025048_P003	Maize	cytosol	63.46	39.93
Solyc04g078320.2.1	Tomato	cytosol	66.57	39.7
TraesCS2B01G255700.1	Wheat	nucleus	62.61	39.61
TraesCS2A01G227200.3	Wheat	cytosol	62.61	39.53
HORVU2Hr1G053480.9	Barley	mitochondrion	62.61	39.46
TraesCS2D01G235100.1	Wheat	nucleus	62.04	39.39
KRH61363	Soybean	nucleus	60.62	37.68
EES11818	Sorghum	nucleus, plastid	63.46	37.21
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	62.04	36.62
KRH52050	Soybean	cytosol, nucleus, peroxisome	60.34	33.33
GSMUA_Achr6P34780_001	Banana	cytosol	42.78	32.2
Solyc09g074400.2.1	Tomato	cytosol	22.1	22.22
Solyc12g009030.1.1	Tomato	cytosol, nucleus	18.98	20.74
Solyc07g041080.2.1	Tomato	cytosol, nucleus	18.98	20.74
Solyc09g009410.2.1	Tomato	cytosol, nucleus	17.28	17.53
Solyc04g016510.2.1	Tomato	nucleus	22.95	16.6
Solyc06g065700.2.1	Tomato	nucleus	22.1	11.39
Solyc10g039190.1.1	Tomato	nucleus	19.55	7.26
Solyc03g097160.2.1	Tomato	nucleus	17.28	7.0

Protein Annotations

MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118	GO:GO:0003674	GO:GO:0003714
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	GO:GO:1903507
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4DFJ1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50998	EnsemblPlantsGene:Solyc12g049100.1	EnsemblPlants:Solyc12g049100.1.1	UniParc:UPI000276988A	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:	:

Description

No Description!

Coordinates

chr12:-:37339858..37342587

Molecular Weight (calculated)

38966.9 Da

IEP (calculated)

6.758

GRAVY (calculated)

-0.315

Length

353 amino acids

Sequence
(BLAST)

001: MDINKDSTPY EFPSSDLMVL EGHTSEVFSC AWSPEGSLLA SASRDCTARI WTIGDGPCNS TIRRRAPNVL VLKSLESQTN ETDDLVTTLN WNSEGTLLAT
101: GSHEGKVRMW NRYGELVKNL DNHSCPIFGL KWNKMGDYLL SGSVDRTAVV WNVISGKPKQ QFEFPSVVID VDWQNNDSFA VSLTGGMIYI CKVGENRPVK
201: RFSGHENDVN AVNWDPSGSL LASCSDDATV KITYTIKWSP TGAGTSNPNQ PLLLASGSFD ATVKIWNVKQ GRLLQSLNRH RGPVFSVAFS PNGKYLASGS
301: ADKCMHIWSV KEGNIVKTYT GDDNIYEVCW NKEGNKIATC FANNKVCVFD IRL

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.