Factsheet for PGSC0003DMT400093628

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039889	Potato	cytosol	14.45	87.93
Solyc12g049100.1.1	Tomato	cytosol	81.3	81.3
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.77	56.34
PGSC0003DMT400093026	Potato	cytosol	76.77	53.03
GSMUA_Achr6P34790_001	Banana	extracellular	21.25	48.08
Os07t0405100-01	Rice	cytosol	68.56	43.6
Zm00001d025048_P003	Maize	cytosol	68.27	42.96
TraesCS2B01G255700.1	Wheat	nucleus	67.14	42.47
TraesCS2A01G227200.3	Wheat	cytosol	67.14	42.4
HORVU2Hr1G053480.9	Barley	mitochondrion	67.14	42.32
TraesCS2D01G235100.1	Wheat	nucleus	66.57	42.27
KRH61363	Soybean	nucleus	65.44	40.67
EES11818	Sorghum	nucleus, plastid	68.27	40.03
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	66.86	39.46
KRH52050	Soybean	cytosol, nucleus, peroxisome	64.59	35.68
GSMUA_Achr6P34780_001	Banana	cytosol	46.74	35.18
PGSC0003DMT400043378	Potato	cytosol	19.26	25.0
PGSC0003DMT400000871	Potato	cytosol	18.41	20.12
PGSC0003DMT400041481	Potato	cytosol	18.41	20.12
PGSC0003DMT400009959	Potato	cytosol	7.65	19.57
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	21.81	13.21
PGSC0003DMT400034226	Potato	cytosol	7.08	9.96
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	21.53	8.09
PGSC0003DMT400066026	Potato	nucleus	20.4	7.58

Protein Annotations

MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1DSD1	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400043199
PGSC:PGSC0003DMG400043199	EnsemblPlants:PGSC0003DMT400093628	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002948F4C	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

Polyadenylation factor subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400043199]

Coordinates

chr12:+:52283995..52286936

Molecular Weight (calculated)

39038.8 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.333

Length

353 amino acids

Sequence
(BLAST)

001: MDINTDSTPY EISSSDLMVL EGHTSEVFTC AWSPEGSLLA SASGDSTARI WTIGDGPCNS TIQRRTPNVL VLKPLESRAT KEHKDVTTLD WNSEGTLLAT
101: GSYEGKVRIW NRYGELVRNL NNHCCPILSL KWNKIGDYLL SGSVDRTAVV WNVQSGKPKQ QFEFPSVVLD ADWQNNDSFA VGSIDNMIYI CKVGENRPVK
201: RFSGHKNEVN AVKWDPSGSL LASCSDDTTV KETYTIKWSS TGAGTSNPNQ QLLLASASFD STVNLWDVEQ GRLLHTLNGH REPIYSIAFS PNGQYLASGS
301: VDKCMNIWSV KEAKIVKTYN GDGIIFEVCW NKEGNKVAAC FSNNKVCVFD IRL

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.