Factsheet for PGSC0003DMT400093026

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088630.1.1	Tomato	cytosol	86.5	86.5
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	53.03	76.77
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.25	74.64
PGSC0003DMT400039889	Potato	cytosol	8.22	72.41
Os07t0405100-01	Rice	cytosol	63.6	58.56
Zm00001d025048_P003	Maize	cytosol	63.41	57.75
TraesCS2A01G227200.3	Wheat	cytosol	61.84	56.53
TraesCS2B01G255700.1	Wheat	nucleus	61.64	56.45
TraesCS2D01G235100.1	Wheat	nucleus	61.25	56.3
KRH61363	Soybean	nucleus	62.43	56.16
GSMUA_Achr6P34780_001	Banana	cytosol	50.68	55.22
HORVU2Hr1G053480.9	Barley	mitochondrion	59.3	54.11
EES11818	Sorghum	nucleus, plastid	63.6	53.99
GSMUA_Achr6P34790_001	Banana	extracellular	16.44	53.85
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	61.84	52.84
KRH52050	Soybean	cytosol, nucleus, peroxisome	62.82	50.23
PGSC0003DMT400043378	Potato	cytosol	14.87	27.94
PGSC0003DMT400009959	Potato	cytosol	6.65	24.64
PGSC0003DMT400041481	Potato	cytosol	13.7	21.67
PGSC0003DMT400000871	Potato	cytosol	13.11	20.74
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	18.98	16.64
PGSC0003DMT400066026	Potato	nucleus	18.59	10.0
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	17.61	9.58
PGSC0003DMT400034226	Potato	cytosol	4.7	9.56

Protein Annotations

Gene3D:1.20.960.30	EntrezGene:102582475	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	UniProt:M1DR36	PFAM:PF00400	PFAM:PF08513	EnsemblPlantsGene:PGSC0003DMG400042597
PGSC:PGSC0003DMG400042597	EnsemblPlants:PGSC0003DMT400093026	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978
UniParc:UPI000295882B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_006342720.1	SEG:seg	:	:	:	:

Description

Polyadenylation factor subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400042597]

Coordinates

chr12:+:56425915..56431454

Molecular Weight (calculated)

56822.7 Da

IEP (calculated)

6.383

GRAVY (calculated)

-0.494

Length

511 amino acids

Sequence
(BLAST)

001: MASLTSDLLN YIVFRYLQES GFLHAAFSFG HEARINKSTV DGNRIPFNAL VKLVQKGIQY LELETNLSND DTDMDEDFRF LEPLDLITKN VSELQQMIKE
101: KKEKVQKDKS NADNELDHER EPARDRKKEK NGNAGDLEPM DICIDSTSSP CEISSCDVMA LEGHTSEVFV CAWSPEGSLL ASGSGDSTAR IWTIGDGPGN
201: STIQRMPPNV KVLKHLESRA AEGNNDVTTL DWNSKGTLLA TGSYNGQAKI WNRSGLLLKT LNKHEGTIFS LKWNKKGDYL LSGSTDRTAV VWNVKSGESK
301: QQFNFNSGML DVDWLDNDSF AVGSTDNKIY VCKVGENQPV KRFSGHKNEI NAIKWDPSGS LLASCSEDTT VKIWSMKKDV CLHDFREHSK EINTIKWSPT
401: GAGTSNPNKK LLLASASFDS TVKLWDVEQG RLFHSLNGHR EVVYSVAFSP NGDYLASGSL DNCMHIWSVK DAKIVKTYKG YGGIYNVCWN KEGNKVAACF
501: SNKVFVFDIG S

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.