Factsheet for GSMUA_Achr6P34780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G227200.3	Wheat	cytosol	69.72	58.5
TraesCS2D01G235100.1	Wheat	nucleus	69.3	58.45
Os07t0405100-01	Rice	cytosol	69.08	58.38
Zm00001d025048_P003	Maize	cytosol	69.3	57.93
TraesCS2B01G255700.1	Wheat	nucleus	68.87	57.89
HORVU2Hr1G053480.9	Barley	mitochondrion	66.52	55.71
VIT_07s0129g00690.t01	Wine grape	nucleus	70.36	55.28
Solyc04g078320.2.1	Tomato	cytosol	69.08	54.73
Solyc12g088570.1.1	Tomato	cytosol	42.22	54.4
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	68.87	54.01
EES11818	Sorghum	nucleus, plastid	69.3	53.99
KRH61363	Soybean	nucleus	63.97	52.82
KRH28415	Soybean	nucleus	62.47	52.51
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.16	50.9
KRH04500	Soybean	cytosol	30.28	50.71
PGSC0003DMT400093026	Potato	cytosol	55.22	50.68
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.6	50.31
KRH04503	Soybean	nucleus	35.82	50.3
KRH58014	Soybean	nucleus	66.31	49.84
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.92	49.16
Solyc12g088630.1.1	Tomato	cytosol	52.88	48.53
CDY18648	Canola	cytosol	59.06	48.43
Solyc12g088620.1.1	Tomato	cytosol	53.73	48.28
AT5G67320.1	Thale cress	cytosol	62.26	47.63
KRH52050	Soybean	cytosol, nucleus, peroxisome	63.75	46.79
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.89	46.76
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	35.18	46.74
Bra037118.1-P	Field mustard	cytosol	60.98	46.73
CDX81324	Canola	cytosol	60.55	46.25
KRH04498	Soybean	mitochondrion	24.73	44.44
Solyc12g049100.1.1	Tomato	cytosol	32.2	42.78
CDY57444	Canola	cytosol, mitochondrion	25.8	41.72
CDY57442	Canola	cytosol	17.7	37.73
VIT_18s0001g09600.t01	Wine grape	cytosol	31.34	26.87
GSMUA_Achr5P26190_001	Banana	cytosol	14.29	19.25
GSMUA_Achr11P...	Banana	nucleus	13.86	14.87
GSMUA_Achr2P01810_001	Banana	cytosol	9.38	13.71
GSMUA_Achr6P34790_001	Banana	extracellular	3.2	9.62
GSMUA_Achr9P22400_001	Banana	cytosol	3.41	9.36
GSMUA_Achr7P26980_001	Banana	nucleus	14.5	8.9
GSMUA_Achr9P22410_001	Banana	cytosol	7.04	8.85
GSMUA_Achr11P...	Banana	mitochondrion	14.07	7.17
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	13.01	6.49
PGSC0003DMT400039889	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G34780_001	EnsemblPlants:GSMUA_Achr6P34780_001	EnsemblPlants:GSMUA_Achr6T34780_001	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0TCS1	PFAM:PF00400
PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978	UniParc:UPI000295F38F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

Putative F-box-like/WD repeat-containing protein TBL1XR1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34780_001]

Coordinates

chr6:+:33241280..33251236

Molecular Weight (calculated)

52948.8 Da

IEP (calculated)

5.211

GRAVY (calculated)

-0.772

Length

469 amino acids

Sequence
(BLAST)

001: MTHSTITSTE LNYLVFRYLQ ESGLTHSAFA LGYEAGINKC AIDGNQVPPG ALITLVQKGL QYIELEANLD NTDVDADDDF SFLQPLDLIT KDVNELQQII
101: KAKKKEKVQK ECDKDKNKDS MIAQDRDQQF ESERVRERQD RDASQEKEKE MMEVDNEQER EKEKEEEKEK QHVESKDKTK LDEHEVSRGP EQMDITPSSQ
201: SLACEISRSE VTILEGHSSE VFACAWSPAG SLLASGSGDS TARIWKIPDG PCGKDVQVLP PNVHVLKHFK GRTNEKSKDV TTLDWNGEGT LLATGSYDGQ
301: ARIWSPDGEL RNTLVKHRGP IFSLKWNKKG DFLLSGSVDK TAIVWDTKTW ECKQQFEYHS APTLDVDWRN NYSFATCSTD TMIYVCKIGE THPVKAFSGH
401: KAEVNAIKWD PTGSLLASCS DDGTAKIWSL KQDKCLHDFK DHSKEIYTIR WRPTGQGTNN PNQQLVLAR

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.