Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P07200_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G29830.1 | GSMUA_Achr8P07200_001 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02663 | Soybean | cytosol, nucleus | 78.82 | 78.82 |
| CDX68590 | Canola | cytosol | 78.5 | 78.5 |
| Bra011139.1-P | Field mustard | cytosol | 78.19 | 78.19 |
| CDY43529 | Canola | cytosol | 77.88 | 77.88 |
| Zm00001d048691_P001 | Maize | cytosol, extracellular, mitochondrion | 71.96 | 77.78 |
| CDY03567 | Canola | cytosol | 77.57 | 77.57 |
| AT4G29830.1 | Thale cress | cytosol | 77.57 | 77.57 |
| KRH19247 | Soybean | cytosol, endoplasmic reticulum | 77.57 | 77.57 |
| CDY14200 | Canola | cytosol | 77.57 | 77.57 |
| Os11t0660300-01 | Rice | cytosol | 77.88 | 77.4 |
| EES08930 | Sorghum | cytosol | 76.95 | 76.71 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 75.7 | 75.47 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 75.08 | 74.84 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 74.77 | 74.53 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 75.08 | 70.47 |
| PGSC0003DMT400000871 | Potato | cytosol | 68.54 | 68.11 |
| Solyc12g009030.1.1 | Tomato | cytosol, nucleus | 67.91 | 67.49 |
| PGSC0003DMT400041481 | Potato | cytosol | 67.91 | 67.49 |
| Solyc07g041080.2.1 | Tomato | cytosol, nucleus | 66.98 | 66.56 |
| VIT_13s0084g00760.t01 | Wine grape | plastid | 18.38 | 53.64 |
| GSMUA_Achr9P22400_001 | Banana | cytosol | 12.77 | 23.98 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 18.07 | 16.67 |
| GSMUA_Achr6P34790_001 | Banana | extracellular | 7.17 | 14.74 |
| GSMUA_Achr11P... | Banana | nucleus | 19.0 | 13.96 |
| GSMUA_Achr7P26980_001 | Banana | nucleus | 25.55 | 10.73 |
| GSMUA_Achr6P34780_001 | Banana | cytosol | 13.71 | 9.38 |
| GSMUA_Achr11P... | Banana | mitochondrion | 21.5 | 7.49 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 20.56 | 7.02 |
| GSMUA_Achr9P22410_001 | Banana | cytosol | 6.54 | 5.63 |
Protein Annotations
| MapMan:15.3.6.1.6 | MapMan:16.8.1.2.6.3 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 |
| GO:GO:0010452 | GO:GO:0016043 | GO:GO:0016441 | GO:GO:0016593 | GO:GO:0019538 | GO:GO:0040029 |
| GO:GO:0051568 | GO:GO:0080008 | EnsemblPlantsGene:GSMUA_Achr2G01810_001 | EnsemblPlants:GSMUA_Achr2P01810_001 | EnsemblPlants:GSMUA_Achr2T01810_001 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0S4C2 | PFAM:PF00400 | PFAM:PF12894 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44090 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0002969933 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
Putative WD repeat-containing protein 61 [Source:GMGC_GENE;Acc:GSMUA_Achr2G01810_001]
Coordinates
chr2:-:7609980..7613402
Molecular Weight (calculated)
34031.3 Da
IEP (calculated)
6.171
GRAVY (calculated)
0.002
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLAGLKSVE NAHDESIWAA AWVPATEARP ALLLTGSLDE TVRLWRPDEL TPVAPPSKGH ALGVVSVAAH PSGAVAASSS LDSFIRVFDI DSNASIATLE
101: APPSEVWSMQ FDPKGTILAV AGGGSASVKL WDTSSWQLVC SLPVPRPEGA RPDKTGSGKF VLSVAWSPDG KKLACGSMDG TIAVFDVARS KFLHHLDGHY
201: MPVRSMVFSP VDPRVLFTAC DDTHVHMYDA EGKSLVGAMS GHTSWVLSVD ASLDGAAIAT GSSDRTVKLW DLSMRTAVQT MTNHSDQVWS VAFRPPGGTG
301: LRVGRLASVS DDKSISLYDY S
101: APPSEVWSMQ FDPKGTILAV AGGGSASVKL WDTSSWQLVC SLPVPRPEGA RPDKTGSGKF VLSVAWSPDG KKLACGSMDG TIAVFDVARS KFLHHLDGHY
201: MPVRSMVFSP VDPRVLFTAC DDTHVHMYDA EGKSLVGAMS GHTSWVLSVD ASLDGAAIAT GSSDRTVKLW DLSMRTAVQT MTNHSDQVWS VAFRPPGGTG
301: LRVGRLASVS DDKSISLYDY S
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.