Factsheet for Zm00001d048691_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29830.1	Zm00001d009745_P023	AT4G05420.1	18223036
AT4G29830.1	Zm00001d039165_P046	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08930	Sorghum	cytosol	94.28	86.96
Os11t0660300-01	Rice	cytosol	89.23	82.04
TraesCS4D01G145700.1	Wheat	cytosol	87.54	80.75
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	87.54	80.75
TraesCS4B01G144300.1	Wheat	cytosol	87.21	80.43
HORVU4Hr1G033170.1	Barley	cytosol	86.87	75.44
GSMUA_Achr2P01810_001	Banana	cytosol	77.78	71.96
KRH02663	Soybean	cytosol, nucleus	71.04	65.73
Bra011139.1-P	Field mustard	cytosol	70.03	64.8
CDX68590	Canola	cytosol	70.03	64.8
KRH19247	Soybean	cytosol, endoplasmic reticulum	69.7	64.49
AT4G29830.1	Thale cress	cytosol	69.7	64.49
CDY43529	Canola	cytosol	69.7	64.49
CDY03567	Canola	cytosol	69.36	64.17
CDY14200	Canola	cytosol	69.02	63.86
PGSC0003DMT400041481	Potato	cytosol	62.63	57.59
PGSC0003DMT400000871	Potato	cytosol	62.29	57.28
Solyc12g009030.1.1	Tomato	cytosol, nucleus	61.95	56.97
Solyc07g041080.2.1	Tomato	cytosol, nucleus	61.62	56.66
VIT_13s0084g00760.t01	Wine grape	plastid	20.2	54.55
Zm00001d044810_P001	Maize	nucleus	12.46	28.68
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	13.47	21.86
Zm00001d016330_P001	Maize	extracellular	10.44	21.38
Zm00001d053142_P001	Maize	nucleus	8.08	14.91
Zm00001d019299_P001	Maize	cytosol	16.84	14.33
Zm00001d046810_P002	Maize	nucleus	26.6	11.74
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	21.55	11.62
Zm00001d025048_P003	Maize	cytosol	21.55	11.41
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	20.88	10.37
Zm00001d043471_P001	Maize	cytosol	11.45	8.9
Zm00001d026195_P002	Maize	cytosol	22.9	7.37
Zm00001d002483_P002	Maize	mitochondrion	22.22	7.25
Zm00001d027706_P004	Maize	nucleus	18.18	5.63

Protein Annotations

MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	UniProt:A0A1D6PNQ5	ProteinID:AQK48475.1	InterPro:Apc4_WD40_dom
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009908
GO:GO:0009910	GO:GO:0009987	GO:GO:0010452	GO:GO:0016043	GO:GO:0016441	GO:GO:0016593
GO:GO:0019538	GO:GO:0040029	GO:GO:0051568	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44090	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000844E360	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d048691	EnsemblPlants:Zm00001d048691_P001
EnsemblPlants:Zm00001d048691_T001	SEG:seg	:	:	:	:

Description

WD repeat-containing protein VIP3

Coordinates

chr4:-:3348342..3351882

Molecular Weight (calculated)

31197.9 Da

IEP (calculated)

6.703

GRAVY (calculated)

0.027

Length

297 amino acids

Sequence
(BLAST)

001: MKLAGLKSVD GAHEESIWAA AWAPAADHRP TAVLLTGALD ETVRAWLPDD LAALGSPTRG HALGVVSLAA HPAGSLAAAV SLDSFIRVFD GNALAAAGGG
101: SGSVKLWDTE KWKAITSLAV PRPEGARPDK TGSGKFVLSV AWSPDGRLLA CGSMDGTIAV YDAVRMKFLH HLEGHHMPVR SMVFSPVDPH VLFTACDDCH
201: VHIYDAREKG LVGAMSGHAS WVLSIDASPD GLAVATGSSD RTVRLWDLNM RTSVQTMSNH SDQVWAVAFR PPGGAGVRAG RLASASDDKS VSLYDYS

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.