Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG22678 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G29830.1 | KXG22678 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048691_P001 | Maize | cytosol, extracellular, mitochondrion | 86.96 | 94.28 |
| Os11t0660300-01 | Rice | cytosol | 90.06 | 89.78 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 88.82 | 88.82 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 88.51 | 88.51 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 88.2 | 88.2 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 87.89 | 82.75 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 76.71 | 76.95 |
| KRH02663 | Soybean | cytosol, nucleus | 69.88 | 70.09 |
| KRH19247 | Soybean | cytosol, endoplasmic reticulum | 68.63 | 68.85 |
| Bra011139.1-P | Field mustard | cytosol | 68.01 | 68.22 |
| AT4G29830.1 | Thale cress | cytosol | 68.01 | 68.22 |
| CDX68590 | Canola | cytosol | 68.01 | 68.22 |
| CDY14200 | Canola | cytosol | 68.01 | 68.22 |
| CDY03567 | Canola | cytosol | 67.7 | 67.91 |
| CDY43529 | Canola | cytosol | 67.7 | 67.91 |
| PGSC0003DMT400041481 | Potato | cytosol | 62.11 | 61.92 |
| Solyc07g041080.2.1 | Tomato | cytosol, nucleus | 61.8 | 61.61 |
| Solyc12g009030.1.1 | Tomato | cytosol, nucleus | 61.18 | 60.99 |
| PGSC0003DMT400000871 | Potato | cytosol | 60.87 | 60.68 |
| VIT_13s0084g00760.t01 | Wine grape | plastid | 18.63 | 54.55 |
| KXG23186 | Sorghum | plastid | 13.04 | 17.21 |
| EER98280 | Sorghum | cytosol, nucleus, plastid | 17.7 | 16.52 |
| EER94850 | Sorghum | plastid | 22.05 | 13.65 |
| KXG20501 | Sorghum | nucleus | 24.53 | 12.02 |
| EES11818 | Sorghum | nucleus, plastid | 20.5 | 10.96 |
| EES12762 | Sorghum | cytosol | 22.36 | 8.12 |
| EER95491 | Sorghum | nucleus | 18.63 | 6.4 |
| OQU81634 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 2.48 | 4.44 |
| OQU76815 | Sorghum | plastid | 1.86 | 2.84 |
| OQU89577 | Sorghum | plastid | 1.86 | 2.82 |
| OQU91217 | Sorghum | plastid | 1.86 | 2.44 |
| OQU84751 | Sorghum | plastid | 1.24 | 1.97 |
Protein Annotations
| MapMan:15.3.6.1.6 | MapMan:16.8.1.2.6.3 | Gene3D:2.130.10.10 | EntrezGene:8070186 | InterPro:Apc4_WD40_dom | UniProt:C5Y7G6 |
| EnsemblPlants:EES08930 | ProteinID:EES08930 | ProteinID:EES08930.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 | GO:GO:0010452 |
| GO:GO:0016043 | GO:GO:0016441 | GO:GO:0016593 | GO:GO:0019538 | GO:GO:0040029 | GO:GO:0051568 |
| GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12894 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44090 | SMART:SM00320 |
| EnsemblPlantsGene:SORBI_3005G206700 | SUPFAM:SSF50978 | unigene:Sbi.16702 | UniParc:UPI0001A86641 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002449942.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr5:+:69290300..69293598
Molecular Weight (calculated)
33944.2 Da
IEP (calculated)
6.265
GRAVY (calculated)
0.049
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLAGLKSVD GAHEESIWAA AWAPAADHRP TAVLLTGALD ETVRAWLPDD LAALGSPARG HALGVVSLAA HPAGALAAAV SLDSFIRVFD VDTGASVATL
101: EAPPSEVWGV QFHPMGNALA AAGGGSGSVK LWDTERWQPI TSLTVPRPEG ARPDRTGSGK FVLSVAWSPD GKLLACGSMD GTIAIYDAVR MKFLHHLEGH
201: HMPVRSMVFS PVDPHVLFTA CDDCHIHIYD AKEKSLIGAM SGHASWVLSI DVSPDGLAVA TGSSDRTVRL WDINMRTSVQ TMSNHSDQVW AVAFRPPGGA
301: GIRAGRLASA SDDKSISLYD YS
101: EAPPSEVWGV QFHPMGNALA AAGGGSGSVK LWDTERWQPI TSLTVPRPEG ARPDRTGSGK FVLSVAWSPD GKLLACGSMD GTIAIYDAVR MKFLHHLEGH
201: HMPVRSMVFS PVDPHVLFTA CDDCHIHIYD AKEKSLIGAM SGHASWVLSI DVSPDGLAVA TGSSDRTVRL WDINMRTSVQ TMSNHSDQVW AVAFRPPGGA
301: GIRAGRLASA SDDKSISLYD YS
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.