CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08930	Sorghum	cytosol	17.21	13.04
EER98280	Sorghum	cytosol, nucleus, plastid	15.98	11.3
VIT_18s0001g09610.t01	Wine grape	cytosol	7.79	8.68
KXG20501	Sorghum	nucleus	22.95	8.52
EES11818	Sorghum	nucleus, plastid	20.9	8.47
CDY12836	Canola	extracellular, vacuole	2.87	8.24
EER94850	Sorghum	plastid	16.39	7.69
EES12762	Sorghum	cytosol	19.67	5.41
EER95491	Sorghum	nucleus	15.57	4.06
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	1.64	2.22
OQU91217	Sorghum	plastid	1.23	1.22
CDY43370	Canola	cytosol	0.41	0.88
OQU84751	Sorghum	plastid	0.41	0.49
OQU76815	Sorghum	plastid	0.0	0.0
OQU89577	Sorghum	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:KXG23186	EnsemblPlantsGene:SORBI_3008G066300	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	ProteinID:KXG23186	ProteinID:KXG23186.1	SEG:seg
SUPFAM:SSF50978	UniParc:UPI00081AE6DC	UniProt:A0A1B6PBV4	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:-:7430568..7433141

Molecular Weight (calculated)

26260.9 Da

IEP (calculated)

10.277

GRAVY (calculated)

0.032

Length

244 amino acids

Sequence
(BLAST)

001: MATLSRAPGE AANQAGCTLA VRGRAASARL WHGHAGLGPC PQRPGCPTPC QPGRCARTGV LVGASGRRAF RAPVWPHLAV RVDRAKVALG GPAALATTLG
101: CSLVFLAAHP VGALAAAVSL DSFIRVFDVD TGASVATLEA PPSEVWCVQF HPKAINACET PSEQVHNKLK PAGSKCLCNT KYLRNWIQHV LKEKFVTIKN
201: WIAPPKSTSS YPTLFWSWTC CVVRNISRFI DYQLASRRDI LLNR

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.