CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76815	Sorghum	plastid	71.11	60.66
OQU89577	Sorghum	plastid	70.56	59.62
OQU91217	Sorghum	plastid	75.56	55.28
OQU84751	Sorghum	plastid	56.11	49.75
EER94850	Sorghum	plastid	76.67	26.54
GSMUA_Achr11P...	Banana	nucleus	56.11	23.11
CDX79933	Canola	nucleus	49.44	20.75
CDY23845	Canola	nucleus	48.89	20.47
Solyc04g016510.2.1	Tomato	nucleus	50.56	18.65
Bra004625.1-P	Field mustard	nucleus	50.0	18.4
CDY06918	Canola	cytosol, nucleus, peroxisome	47.78	17.73
Bra016929.1-P	Field mustard	nucleus, plastid	48.89	16.15
KRH31616	Soybean	nucleus	50.0	15.79
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	51.11	15.78
CDY14776	Canola	mitochondrion	47.78	15.58
KRH72083	Soybean	nucleus	48.89	15.44
AT2G05720.1	Thale cress	cytosol	22.78	14.86
AT2G41500.1	Thale cress	nucleus, plastid	43.89	14.26
VIT_08s0007g05930.t01	Wine grape	nucleus	48.89	13.35
KXG20501	Sorghum	nucleus	12.78	3.5
EES11818	Sorghum	nucleus, plastid	8.89	2.66
EES08930	Sorghum	cytosol	4.44	2.48
EES12762	Sorghum	cytosol	12.22	2.48
EER98280	Sorghum	cytosol, nucleus, plastid	4.44	2.32
EER95491	Sorghum	nucleus	11.11	2.13
KXG23186	Sorghum	plastid	2.22	1.64

Protein Annotations

EnsemblPlants:OQU81634	EnsemblPlantsGene:SORBI_3006G089101	InterPro:Prp4	PANTHER:PTHR19846	ProteinID:OQU81634	ProteinID:OQU81634.1
SEG:seg	UniParc:UPI000B8B9998	UniProt:A0A1Z5RCZ9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:+:45861235..45863304

Molecular Weight (calculated)

20283.8 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.782

Length

180 amino acids

Sequence
(BLAST)

001: MVVRAYLRRL GEREMERDDR LRALMVRLEV DGQVDRLLRA QEDDHAARTG EEEQIQYPFF TKGTQELLKA RVDIAQYSLP RAKPRIEMAK RCHEDSDEDP
101: EAEAELVVKQ AGEFVLECSE IGDDRPLIGC SFSRDASMLA TRKTPGPWPD AGSWPEPSNS VASSPSSRVP TKNQNASRPA

Best Arabidopsis Sequence Match ( AT2G41500.1 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.