CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06918	Canola	cytosol, nucleus, peroxisome	83.33	94.85
CDY23845	Canola	nucleus	71.01	91.16
CDX79933	Canola	nucleus	69.57	89.51
Bra016929.1-P	Field mustard	nucleus, plastid	83.51	84.59
AT2G41500.1	Thale cress	nucleus, plastid	75.91	75.63
Solyc04g016510.2.1	Tomato	nucleus	51.63	58.4
GSMUA_Achr11P...	Banana	nucleus	45.65	57.67
KRH31616	Soybean	nucleus	57.25	55.44
KRH72083	Soybean	nucleus	56.52	54.74
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	55.62	52.66
EER94850	Sorghum	plastid	49.28	52.31
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	47.28	51.79
Os03t0355400-00	Rice	cytosol, nucleus, plastid	48.91	51.53
Os03t0355200-00	Rice	cytosol, nucleus, plastid	48.91	51.53
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	47.46	51.47
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	47.1	51.08
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	47.1	51.08
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	47.1	50.68
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	49.09	49.18
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	46.92	47.79
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	15.58	47.78
VIT_08s0007g05930.t01	Wine grape	nucleus	56.7	47.5
TraesCS2A01G175200.1	Wheat	plastid	46.56	46.47
OQU89577	Sorghum	plastid	16.85	43.66
OQU91217	Sorghum	plastid	19.02	42.68
HORVU2Hr1G032990.1	Barley	cytosol	25.72	36.5
CDY57442	Canola	cytosol	6.52	16.36
CDY43529	Canola	cytosol	9.42	16.2
CDX68590	Canola	cytosol	9.24	15.89
CDY14200	Canola	cytosol	9.24	15.89
CDY03567	Canola	cytosol	9.24	15.89
CDY11502	Canola	cytosol	9.42	15.03
CDX76728	Canola	cytosol	9.06	14.45
CDY05378	Canola	nucleus	15.58	12.95
CDY18648	Canola	cytosol	13.41	12.94
CDY19814	Canola	nucleus	15.58	12.87
CDX87098	Canola	nucleus	15.58	12.87
CDY05473	Canola	nucleus	15.4	12.76
CDX81324	Canola	cytosol	13.95	12.54
CDY12834	Canola	endoplasmic reticulum, extracellular	3.62	10.75
CDX77335	Canola	cytosol	7.25	9.48
CDY12836	Canola	extracellular, vacuole	1.45	9.41
CDY41854	Canola	cytosol	9.24	9.38
CDY57444	Canola	cytosol, mitochondrion	4.35	8.28
CDY22910	Canola	nucleus	13.41	7.95
CDY54973	Canola	nucleus	13.22	7.84
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	12.14	7.72
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	12.14	7.72
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	12.14	7.69
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	12.14	7.64
CDY27109	Canola	cytosol	0.36	1.77
CDX92625	Canola	cytosol	0.36	1.77
CDY40782	Canola	cytosol	0.36	1.77
CDY43370	Canola	cytosol	0.36	1.77
CDY72066	Canola	cytosol	0.36	1.77

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	GO:A0A078FNQ1	UniProt:A0A078FNQ1	EnsemblPlants:CDY14776
ProteinID:CDY14776	ProteinID:CDY14776.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00084638001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285	PFAM:PF00400
PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF50978	UniParc:UPI0004EE2C09	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaC04g47730DBnaC04g47730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNQ1]

Coordinates

chrLK032047:-:299261..302777

Molecular Weight (calculated)

62026.6 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.457

Length

552 amino acids

Sequence
(BLAST)

001: MVERLKLYCS SYACLQRSWF EKKEHTKLRS AAKPTSCLGL EESNVIRSFL IAVSTWNPTM KIMFHSYQQL QFQDSIDYRL LCTVQSLTLF TIIAGVSAIP
101: PPSFPPPMAP IPHPPLARPP TFRPPQNGGA KASDSDSESD DEHYVISEES KQVRERQEKA MQELLIKRRA AAIAVPTNDK SVRDRLRRLG EPITLFGEQE
201: MERRARLAQL MARLDIGGQL DKLLQAYEDD AAPKDEVDEE ELQYPFFTEG PKELREARIE IAKFSIKRAA VRIQRAKRRR DDPDEDVEAE TKWALKQAKG
301: LALDCSNFGD DRPLTGCSFS RDGKILATCS LSGVTKLWEM PQVTNKIAVL KDHKERATDV VFSPVDDCLA TASADRTAKL WKTDGTLLQT FEASSGLDSL
401: ARVWDLRTGR SILVFQGHIK PVLSVTFSPN GYHLASGGED NQCRIWDLRM RKSLYIIPAH ANLVSQVKYE PQEGYFLATA SYDMKVNIWS GRDFSLVKSL
501: AGHESKVASL DITADSSCIA TVSHDRTIKL WTSSSNEEEE EDQGGETMDV DL

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.