Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22910 | Canola | nucleus | 98.71 | 98.71 |
| AT3G21540.1 | Thale cress | nucleus | 82.81 | 80.73 |
| KRG96051 | Soybean | nucleus | 70.57 | 69.6 |
| VIT_08s0007g04690.t01 | Wine grape | nucleus | 71.11 | 69.54 |
| KRH67774 | Soybean | nucleus, plastid | 70.25 | 69.35 |
| PGSC0003DMT400066026 | Potato | nucleus | 70.35 | 68.95 |
| Solyc10g039190.1.1 | Tomato | nucleus | 69.92 | 68.53 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 67.78 | 67.2 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 65.09 | 64.47 |
| TraesCS4A01G370000.1 | Wheat | nucleus | 61.22 | 60.64 |
| TraesCS4B01G317800.1 | Wheat | nucleus | 61.12 | 60.53 |
| EER95491 | Sorghum | nucleus | 59.61 | 59.23 |
| Zm00001d027706_P004 | Maize | nucleus | 59.61 | 57.87 |
| Os03t0151700-01 | Rice | nucleus | 58.43 | 57.87 |
| HORVU4Hr1G083410.1 | Barley | endoplasmic reticulum | 60.79 | 55.87 |
| CDY43529 | Canola | cytosol | 7.3 | 21.18 |
| CDX68590 | Canola | cytosol | 7.3 | 21.18 |
| CDY14200 | Canola | cytosol | 7.3 | 21.18 |
| CDY03567 | Canola | cytosol | 7.3 | 21.18 |
| CDY11502 | Canola | cytosol | 7.41 | 19.94 |
| CDY57442 | Canola | cytosol | 4.62 | 19.55 |
| CDX76728 | Canola | cytosol | 7.2 | 19.36 |
| CDX87098 | Canola | nucleus | 12.14 | 16.92 |
| CDY19814 | Canola | nucleus | 12.03 | 16.77 |
| CDY05378 | Canola | nucleus | 11.82 | 16.57 |
| CDY05473 | Canola | nucleus | 11.71 | 16.37 |
| CDX85488 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.25 | 16.3 |
| CDY23845 | Canola | nucleus | 7.52 | 16.28 |
| CDY38089 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.14 | 16.24 |
| CDX69423 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.14 | 16.24 |
| CDY16982 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.25 | 16.19 |
| CDX79933 | Canola | nucleus | 7.3 | 15.85 |
| CDY06918 | Canola | cytosol, nucleus, peroxisome | 8.06 | 15.46 |
| CDY18648 | Canola | cytosol | 9.13 | 14.86 |
| CDY41854 | Canola | cytosol | 8.49 | 14.52 |
| CDX81324 | Canola | cytosol | 9.45 | 14.33 |
| CDY14776 | Canola | mitochondrion | 7.84 | 13.22 |
| CDY12836 | Canola | extracellular, vacuole | 1.18 | 12.94 |
| CDX77335 | Canola | cytosol | 5.69 | 12.56 |
| CDY57444 | Canola | cytosol, mitochondrion | 2.9 | 9.31 |
| CDY12834 | Canola | endoplasmic reticulum, extracellular | 1.72 | 8.6 |
| CDY72066 | Canola | cytosol | 0.54 | 4.42 |
| CDX92625 | Canola | cytosol | 0.54 | 4.42 |
| CDY43370 | Canola | cytosol | 0.54 | 4.42 |
| CDY40782 | Canola | cytosol | 0.54 | 4.42 |
| CDY27109 | Canola | cytosol | 0.54 | 4.42 |
Protein Annotations
| MapMan:17.1.3.2.1.3.3 | Gene3D:2.130.10.10 | UniProt:A0A078IXL4 | EnsemblPlants:CDY54973 | ProteinID:CDY54973 | ProteinID:CDY54973.1 |
| ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00014927001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF04003 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19853 | PANTHER:PTHR19853:SF0 | SMART:SM00320 |
| SUPFAM:SSF50978 | InterPro:SSU_processome_Utp12 | UniParc:UPI0004EF0BDF | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaCnng27820DBnaCnng27820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXL4]
Coordinates
chrLK033366:-:12614..17668
Molecular Weight (calculated)
103577.0 Da
IEP (calculated)
7.138
GRAVY (calculated)
-0.307
Length
931 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAYLRYEQ ASSFGVITSL ESNISYDSTG KHVLAPALEK VGIWHVRQGI CTKTLVPSSS RVGKSLAVTS IASSASTSVA VGYADGSIRI WDSEKGTCET
101: TLNGHKGAVT ALRYNKAGSM FASGSKDNDV ILWDVVGETG LFRLRGHRDQ VTDLVFLDDG KKLVTASKDK FLRVWDLETQ HCMQIISGHH TEVWSVDVDP
201: EEKYLVTGSA DQELRFYAVK QNMPHVSVNK WEVLIPFGEI QRQTKDRVAS VRFSNSGSLL ACQMAGKTIE IFQVLDETEA KRKAKRRLRR KEKKTSKEGV
301: ENGDASNETE KADTVTTPTV PDVFKLLQVI RAGRKISSFS FCPITPKDSL ATLALSLNNN SLEFYTLKSS ENEKTATIEH QGHRSDVRSV ALSADNTLLM
401: STSHSEVKIW NPSTGSCLRT IDSGYGICSL IVPKSKYGIV GTKSGVLEII DIGSATKVED VEAHGGTIWS IAPIPDDTGF VTVSADHEVK FWEYQVKKAG
501: QKAKQLTVSN VRSLKMNDDV LAVAISPDAK HIAVALLDST VKVFYVDSLK FFLSLYGHKL PVMCIDISSD GALIVTGSQD KNIKIWGLDF GDCHKSIFAH
601: DDSVMGVKFV RNTHYMFSIG KDRLVKYWDA DKFELLLTLG GHHAEIWCFA VSNRGDFLVT GSHDRSMRRW DRTEEPFFLE EEKEKRLDEL FESEIDSAAE
701: NRHGSEEEIT EEGVAGLAKK TTVDVLSAAD SIIEALELAE NEKNRIAEYE EEKTRGTVPD LAPNVVMLGL SPSEFVLKTI SKEKTNDLEH ILLPLPFSDA
801: LKLLSYMESW SLIPEKVELV CRIATIVLQT HHNQLVTTPA ARPILSVLRD ILHAKVKESK DTIGYNLAAM DHLKQMMASR SDAPFRDAKA KLMEIRSQQA
901: KRMEARLDTK TERKRKKKQK RLEDGHGHAW A
101: TLNGHKGAVT ALRYNKAGSM FASGSKDNDV ILWDVVGETG LFRLRGHRDQ VTDLVFLDDG KKLVTASKDK FLRVWDLETQ HCMQIISGHH TEVWSVDVDP
201: EEKYLVTGSA DQELRFYAVK QNMPHVSVNK WEVLIPFGEI QRQTKDRVAS VRFSNSGSLL ACQMAGKTIE IFQVLDETEA KRKAKRRLRR KEKKTSKEGV
301: ENGDASNETE KADTVTTPTV PDVFKLLQVI RAGRKISSFS FCPITPKDSL ATLALSLNNN SLEFYTLKSS ENEKTATIEH QGHRSDVRSV ALSADNTLLM
401: STSHSEVKIW NPSTGSCLRT IDSGYGICSL IVPKSKYGIV GTKSGVLEII DIGSATKVED VEAHGGTIWS IAPIPDDTGF VTVSADHEVK FWEYQVKKAG
501: QKAKQLTVSN VRSLKMNDDV LAVAISPDAK HIAVALLDST VKVFYVDSLK FFLSLYGHKL PVMCIDISSD GALIVTGSQD KNIKIWGLDF GDCHKSIFAH
601: DDSVMGVKFV RNTHYMFSIG KDRLVKYWDA DKFELLLTLG GHHAEIWCFA VSNRGDFLVT GSHDRSMRRW DRTEEPFFLE EEKEKRLDEL FESEIDSAAE
701: NRHGSEEEIT EEGVAGLAKK TTVDVLSAAD SIIEALELAE NEKNRIAEYE EEKTRGTVPD LAPNVVMLGL SPSEFVLKTI SKEKTNDLEH ILLPLPFSDA
801: LKLLSYMESW SLIPEKVELV CRIATIVLQT HHNQLVTTPA ARPILSVLRD ILHAKVKESK DTIGYNLAAM DHLKQMMASR SDAPFRDAKA KLMEIRSQQA
901: KRMEARLDTK TERKRKKKQK RLEDGHGHAW A
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.