Factsheet for Os03t0151700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G317800.1	Wheat	nucleus	85.21	85.21
TraesCS4A01G370000.1	Wheat	nucleus	85.21	85.21
EER95491	Sorghum	nucleus	83.19	83.46
Zm00001d027706_P004	Maize	nucleus	83.09	81.44
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	85.32	79.17
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	70.96	70.96
KRH67774	Soybean	nucleus, plastid	61.81	61.61
KRG96051	Soybean	nucleus	61.6	61.33
VIT_08s0007g04690.t01	Wine grape	nucleus	61.91	61.13
PGSC0003DMT400066026	Potato	nucleus	60.74	60.11
Solyc10g039190.1.1	Tomato	nucleus	60.21	59.58
AT3G21540.1	Thale cress	nucleus	59.68	58.74
CDY54973	Canola	nucleus	57.87	58.43
CDY22910	Canola	nucleus	57.77	58.32
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	57.55	57.61
Bra039543.1-P	Field mustard	nucleus	57.55	57.31
Os07t0252000-01	Rice	cytosol	7.87	20.96
Os11t0660300-01	Rice	cytosol	6.91	20.12
Os06t0649500-01	Rice	nucleus	11.81	16.97
Os07t0405100-01	Rice	cytosol	9.57	16.22
Os04t0592700-01	Rice	nucleus	15.21	16.05
Os03t0355400-00	Rice	cytosol, nucleus, plastid	7.55	13.55
Os03t0355200-00	Rice	cytosol, nucleus, plastid	7.55	13.55
Os07t0205200-02	Rice	cytosol, nucleus	3.19	11.86

Protein Annotations

MapMan:17.1.3.2.1.3.3	Gene3D:2.130.10.10	EntrezGene:4331644	ProteinID:ABF94016.1	EMBL:AK101270	ProteinID:BAF10900.1
ProteinID:BAS82330.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030490
GO:GO:0030515	GO:GO:0032040	GO:GO:0034388	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlantsGene:Os03g0151700	EnsemblPlants:Os03t0151700-01	PFAM:PF00400	PFAM:PF04003	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19853	PANTHER:PTHR19853:SF0	UniProt:Q10RP1	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF101908	SUPFAM:SSF50998	InterPro:SSU_processome_Utp12	UniParc:UPI0000DB4866	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_015632566.1	SEG:seg	:

Description

OsWD40-63Similar to WD repeat protein (Fragment). (Os03t0151700-01);Hypothetical conserved gene. (Os03t0151700-02)

Coordinates

chr3:+:2845714..2851680

Molecular Weight (calculated)

103414.0 Da

IEP (calculated)

6.575

GRAVY (calculated)

-0.264

Length

940 amino acids

Sequence
(BLAST)

001: MVKAYLRYEP AISFGVVASP ESNVAYDPSG RLLLAAALDR FAAWDLKRGL PSLSFATAAP SPSLAVSCLA TFPSAASASA SSIASGHADG SIRLWDTETG
101: SCEATLHGHR SAASALVFGP SGAIIASGSK DCDIILWDVV GQAGLYRLRG HRDQVTGLVF LDSGKKLVSC SKDKLIRVWD LDTQHCLQIV GGHRSEIWSI
201: DVDPSERFLV SGSADQELRV FTVRKSAEEG EDWSKWDMLK LFGEIPRQSK ERVATVKFNK NGNLVACQVA GKTVDIYRVL DETEAARKAK RRMHRKKEKA
301: LAKSMAAEGN GTVIDPLSAQ DLQNPTPVVT DIFKLLHVLR VNKKICSVAF SPNNPPKGCL ATLSLSLNNN MLETYSVDNE NVSNMYSIEM HGHRSDIRSL
401: ALNSEDNLLM STSHNAVKIW NPSTGDCLRT IDSDYGLCSA FVPGNRYALV GTKSGTLEII DINSGSSIEV IEAHAGSIRS IVLIPNEDGT AGAWGFVTGS
501: ADHDVKFWEY QLMQKSDNDS KQLSVTNVKT LKMNDDVLAV TISPTGNHIA VALLDGAVKV FTMDSLKFAL TLYGHKLPVL CMDISSDGVL IVTGSADKNL
601: KIWGMDFGDC HKSIFAHTDS VMDVKFVSKT HYMFSVGKDR TVKYWDADKF ELLLTLEGHH AEVWCLAISS RGDFIVTGSH DRSIRRWDRT EEQLFIEEEQ
701: EKRLEETFEA DLDSAMDHKY GQKDGAPDEG SVGVPGRKTK ETVTAADAII DALDTAEEEV KRLDQHQEGQ NNGNGTTFQP NVIMQGQSPS DYVLNVVSNV
801: RPNDLEQALL SLPFSDALKI MSYLKEWSMV PLKVELVCRV CLVLLQTHHS QLTTTPSARS ILTELKGILY SRVKECKDAI GFNLAAMDHI KELLAMRSDA
901: PFRDARAKLM EIRQEQSRRS DRSDGAEKRK KKKRRTSGES

Best Arabidopsis Sequence Match ( AT3G21540.1 )
(BLAST)

001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.