Factsheet for VIT_08s0007g04690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67774	Soybean	nucleus, plastid	77.0	77.73
KRG96051	Soybean	nucleus	76.89	77.54
PGSC0003DMT400066026	Potato	nucleus	74.79	74.95
Solyc10g039190.1.1	Tomato	nucleus	74.47	74.63
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	71.43	72.42
CDY22910	Canola	nucleus	69.85	71.43
AT3G21540.1	Thale cress	nucleus	71.53	71.31
CDY54973	Canola	nucleus	69.54	71.11
Bra039543.1-P	Field mustard	nucleus	69.85	70.44
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	69.01	69.89
EER95491	Sorghum	nucleus	62.4	63.39
TraesCS4A01G370000.1	Wheat	nucleus	62.5	63.3
TraesCS4B01G317800.1	Wheat	nucleus	62.29	63.09
Zm00001d027706_P004	Maize	nucleus	62.4	61.94
Os03t0151700-01	Rice	nucleus	61.13	61.91
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	62.4	58.64
VIT_08s0007g03360.t01	Wine grape	cytosol	8.19	22.67
VIT_11s0016g01730.t01	Wine grape	cytosol	6.83	20.25
VIT_13s0084g00760.t01	Wine grape	plastid	2.21	19.09
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	2.63	17.36
VIT_16s0039g01690.t01	Wine grape	cytosol	16.39	17.33
VIT_04s0008g05780.t01	Wine grape	nucleus	12.18	17.16
VIT_18s0001g09610.t01	Wine grape	cytosol	3.78	16.44
VIT_07s0129g00690.t01	Wine grape	nucleus	9.87	15.75
VIT_08s0007g05930.t01	Wine grape	nucleus	8.93	12.9
VIT_18s0001g09600.t01	Wine grape	cytosol	7.25	12.61

Protein Annotations

EntrezGene:100250257	wikigene:100250257	MapMan:17.1.3.2.1.3.3	Gene3D:2.130.10.10	ProteinID:CCB55354	ProteinID:CCB55354.1
UniProt:F6HKD2	EMBL:FN595991	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030490
GO:GO:0030515	GO:GO:0032040	GO:GO:0034388	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF04003	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19853	PANTHER:PTHR19853:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	InterPro:SSU_processome_Utp12
TIGR:TC55290	UniParc:UPI0001983EC3	ArrayExpress:VIT_08s0007g04690	EnsemblPlantsGene:VIT_08s0007g04690	EnsemblPlants:VIT_08s0007g04690.t01	unigene:Vvi.19501
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	EntrezGene:WDR3	wikigene:WDR3
RefSeq:XP_002266326	RefSeq:XP_002266326.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:18626919..18640534

Molecular Weight (calculated)

106032.0 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.268

Length

952 amino acids

Sequence
(BLAST)

001: MVKAYLRYEP AAAFGVIASV DSNIAYDSSG KHLLAPALEK VGVWHVRQGV CTKTLTPSPS SRGSSFAVTS IASSQSSLIA SGYADGSIRI WDCDKGTCVT
101: TLNGHKGAVT ALRYNKIGSL LASGSKDNDV ILWDVVGETG LFRLRGHRDQ VTDLVFLDSG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH TEIWSIDTDP
201: EERYLVTGSA DPELRFYTIK HDLVNERSIS KLNGTEAVDS GDSSVQSKWE VLKLFGEIQR QSKDRVATVR FNKSGHLLAC QVAGKIVEIL RVLDESESKR
301: KAKRRIHRKK EKKSIKEVAD VTLDGDVNLL KGEESFIPTV TVSDVFKLIH TLRASKKICS ISFCPVTPKS SLASLALSLN NNLLEIHSIE SSSSTKTLAI
401: ELQGHRSDVR SVTLSSDNTL LMSTSHNAVK FWNPSTGSCL RTIDSGYGLC GLILPRNKYA LVGTKAGTIE IIDIGSGTCI EVVEAHGGSV RSIATIPDGN
501: GFVTGSEDHE VKYWEYQYTQ EPNQHTKPLM LSHVRTMKMN DDVQVVAVSP DAKYIAAALL DCTVKVFFMD SLKFFLSLYG HKLPVLCMDV SSDGDLLVTG
601: SADKNLKIWG LDFGDCHKSI FAHADSVMAV QFVRNTHYVF SAGKDRLIKY WDADKFELLL TLEGHHAEVW CLSISNRGDF IVSGSHDRSI HRWDRTEEPF
701: FIEEEKEKRL EQMFESDLDN AFENRYAPKE ELPEEGAVAL AGKKTKETLS ATDSIIDALD IAEDELKRIS EHEEEKTKGK VADFQPNILM LGLSPSDFVL
801: RALSNVHTND MEQTLLALPF SDALKLLSYL KDWTINPDKV ELVCRIATVL LQTHYNQLVT TPSARPVLSV LRDILYARVK ECKDVLGFNL AAMDHLKQLM
901: ALKSDALFQD AKTKLLEIRA QHSKRIEART ETREEKQRKK KKKKSSDEHA WT

Best Arabidopsis Sequence Match ( AT3G21540.1 )
(BLAST)

001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.