Factsheet for VIT_07s0129g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 3
plastid 1
cytosol 1
extracellular 2
golgi 2
plasma membrane 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04500	Soybean	cytosol	42.21	90.0
CDY57442	Canola	cytosol	28.64	77.73
KRH28415	Soybean	nucleus	72.36	77.42
KRH04498	Soybean	mitochondrion	32.83	75.1
KRH58014	Soybean	nucleus	78.39	75.0
GSMUA_Achr6P34780_001	Banana	cytosol	55.28	70.36
TraesCS2B01G255700.1	Wheat	nucleus	65.16	69.71
TraesCS2A01G227200.3	Wheat	cytosol	65.16	69.59
Os07t0405100-01	Rice	cytosol	64.66	69.55
AT5G67320.1	Thale cress	cytosol	71.36	69.49
CDY18648	Canola	cytosol	66.5	69.41
TraesCS2D01G235100.1	Wheat	nucleus	64.49	69.24
Zm00001d025048_P003	Maize	cytosol	64.32	68.45
Bra037118.1-P	Field mustard	cytosol	69.18	67.48
HORVU2Hr1G053480.9	Barley	mitochondrion	62.65	66.79
CDX81324	Canola	cytosol	68.68	66.78
EES11818	Sorghum	nucleus, plastid	64.66	64.12
KRH04503	Soybean	nucleus	35.68	63.77
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	63.48	63.38
GSMUA_Achr6P34790_001	Banana	extracellular	15.91	60.9
CDY57444	Canola	cytosol, mitochondrion	21.11	43.45
VIT_18s0001g09600.t01	Wine grape	cytosol	34.51	37.66
VIT_08s0007g03360.t01	Wine grape	cytosol	15.41	26.74
VIT_13s0084g00760.t01	Wine grape	plastid	4.36	23.64
VIT_18s0001g09610.t01	Wine grape	cytosol	8.38	22.83
VIT_11s0016g01730.t01	Wine grape	cytosol	11.22	20.87
VIT_08s0007g05930.t01	Wine grape	nucleus	18.26	16.54
VIT_04s0008g05780.t01	Wine grape	nucleus	16.58	14.64
VIT_16s0039g01690.t01	Wine grape	cytosol	15.41	10.22
VIT_08s0007g04690.t01	Wine grape	nucleus	15.75	9.87
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	1.51	6.25

Protein Annotations

Gene3D:1.20.960.30	EntrezGene:100256008	wikigene:100256008	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ProteinID:CCB57777
ProteinID:CCB57777.1	ncoils:Coil	UniProt:F6HSW7	EMBL:FN596246	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118
GO:GO:0003674	GO:GO:0003714	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100256008	wikigene:LOC100256008	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2
SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978	UniParc:UPI000210915F	ArrayExpress:VIT_07s0129g00690	EnsemblPlantsGene:VIT_07s0129g00690
EnsemblPlants:VIT_07s0129g00690.t01	unigene:Vvi.22133	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002283852	RefSeq:XP_002283852.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:15921202..15944645

Molecular Weight (calculated)

67792.3 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.740

Length

597 amino acids

Sequence
(BLAST)

001: MSSITSAELN YLVFRYLHES GFTHSAFSLG YEAGINKCPI DGNMVPPGAL ITFVQKGLQF VEMEANLSNS DTDVDDDFSF LQPLDLITKD VHQLRQMIRE
101: KKRNLQKEKD KESDKEHELV RARVREKERL ERQERQERQE KQERQERQEI QERQERQERQ ERQEKEKERE KEKEREKDKE REKQHDDQID TEMTTDQEDV
201: VTVKHDENGV SGVLCMCFVG PEPMDISTSS TFQACEIPSS DVTILEGHTS EVCACAWSPA GSLLASGSGD STARIWTIAD GTCRSSVQNG PSNVLVLKHV
301: KGRTNEKSKD VTTLDWNGDG TLLATGSYDG QARIWSTNGE LRSTLSKHKG PIFSLKWNRK GDYLLTGSCD KTAIVWDVKT EEWKQQFEFH AGPTLDVDWR
401: NNVSFATSST DNMIYVCKIG ENRPIKTFSG HQGEVNCVKW DPTGQLLASC SDDITAKIWS IKQEKYLHDL REHAKEIYTI RWSPTGQGTN NPNQPLVLAS
501: ASFDSTVKLW DVEQGKLLCS LNGHRDPVYS VAFSPNGEYL ASGSLDRSMH IWSLKERKIV KTYTGNGGIF EVCWNKEGDK IAACFANNTV CVLDFRM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.