Factsheet for VIT_18s0001g09600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34790_001	Banana	extracellular	11.52	40.38
Os07t0405100-01	Rice	cytosol	38.94	38.38
TraesCS2A01G227200.3	Wheat	cytosol	38.76	37.92
TraesCS2B01G255700.1	Wheat	nucleus	38.57	37.81
TraesCS2D01G235100.1	Wheat	nucleus	38.39	37.77
Zm00001d025048_P003	Maize	cytosol	38.57	37.61
HORVU2Hr1G053480.9	Barley	mitochondrion	37.84	36.96
EES11818	Sorghum	nucleus, plastid	38.76	35.22
VIT_07s0129g00690.t01	Wine grape	nucleus	37.66	34.51
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	37.66	34.45
GSMUA_Achr6P34780_001	Banana	cytosol	26.87	31.34
VIT_08s0007g03360.t01	Wine grape	cytosol	14.26	22.67
VIT_13s0084g00760.t01	Wine grape	plastid	3.84	19.09
VIT_18s0001g09610.t01	Wine grape	cytosol	7.31	18.26
VIT_11s0016g01730.t01	Wine grape	cytosol	9.69	16.51
VIT_08s0007g05930.t01	Wine grape	nucleus	13.71	11.38
VIT_04s0008g05780.t01	Wine grape	nucleus	12.61	10.21
VIT_08s0007g04690.t01	Wine grape	nucleus	12.61	7.25
VIT_16s0039g01690.t01	Wine grape	cytosol	11.88	7.22
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	1.46	5.56

Protein Annotations

MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ProteinID:CBI19448	ProteinID:CBI19448.3	UniProt:E0CPN5	EMBL:FN595227
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118	GO:GO:0003674	GO:GO:0003676	GO:GO:0003714	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001BE127A
ArrayExpress:VIT_18s0001g09600	EnsemblPlantsGene:VIT_18s0001g09600	EnsemblPlants:VIT_18s0001g09600.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:8002639..8020875

Molecular Weight (calculated)

61181.0 Da

IEP (calculated)

6.070

GRAVY (calculated)

-0.151

Length

547 amino acids

Sequence
(BLAST)

001: MTYVCKVGEN RPVKTFSGHQ DEVNAVKWDP TVSFLASCSD DYTAKVIDNF SLTPFYMKQD DHLHDLKEHT KEIYTIRWSP TGAGTNNPNH QLVLASASFD
101: STIKLWDVEL GCLLYSLNGH SLEYNSSHHN LKTYTGNGGI FEVCWNKEGD RIAACFSNNI VCVLVSVCSR FYFPILVYYD HHHGRTSFVE FDYFLELICL
201: GWKAVVVCAW NPTCSLLASG SHDSTARIWT IVDGACNSTL QDVLVLTHAG AMTVEDNGFA AICELDWKGD GTLLATGSCT GETRIWTPNG ALVASFEEDM
301: GHIVSLQWNQ MGNSLLSCGS DKVVVWDINT VGSRQEFSFH SARILDADWR NNISFATCSA DRKIHVCEVG LNRPYKTFLG HRAEINGIRW SPTGTLLASC
401: SDDTSIKIWS MNHNSFVRDL RSHKREVYCI EWSPTGPTTD NPNLTLLLAS SSFDNTINVW DVERGNPIYG LTRHRNIIYT IEFSPNGEYL ASGSLDNWLY
501: VWSVKEGRLI KSYYGGGGVT DISWNKSSDK IAVSFVNKLV CVLDLKM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.