Factsheet for TraesCS2D01G235100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G255700.1	Wheat	nucleus	98.92	98.57
HORVU2Hr1G053480.9	Barley	mitochondrion	94.78	94.11
Os07t0405100-01	Rice	cytosol	90.29	90.45
Zm00001d025048_P003	Maize	cytosol	88.13	87.34
EES11818	Sorghum	nucleus, plastid	89.03	82.23
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	84.89	78.93
KRH04500	Soybean	cytosol	39.39	78.21
GSMUA_Achr6P34780_001	Banana	cytosol	58.45	69.3
CDY57442	Canola	cytosol	26.8	67.73
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	42.27	66.57
PGSC0003DMT400039889	Potato	cytosol	6.83	65.52
Solyc04g078320.2.1	Tomato	cytosol	69.42	65.2
KRH04498	Soybean	mitochondrion	30.58	65.13
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.3	65.07
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.17	64.86
KRH28415	Soybean	nucleus	64.93	64.7
VIT_07s0129g00690.t01	Wine grape	nucleus	69.24	64.49
KRH61363	Soybean	nucleus	64.39	63.03
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.94	62.32
Solyc12g049100.1.1	Tomato	cytosol	39.39	62.04
PGSC0003DMT400093026	Potato	cytosol	56.3	61.25
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.86	60.86
Solyc12g088620.1.1	Tomato	cytosol	56.83	60.54
Solyc12g088630.1.1	Tomato	cytosol	55.58	60.47
CDY18648	Canola	cytosol	61.51	59.79
KRH58014	Soybean	nucleus	67.09	59.78
AT5G67320.1	Thale cress	cytosol	64.21	58.24
CDX81324	Canola	cytosol	63.49	57.49
Bra037118.1-P	Field mustard	cytosol	63.13	57.35
Solyc12g088570.1.1	Tomato	cytosol	37.23	56.87
KRH52050	Soybean	cytosol, nucleus, peroxisome	65.29	56.81
KRH04503	Soybean	nucleus	28.24	47.01
CDY57444	Canola	cytosol, mitochondrion	20.32	38.97
VIT_18s0001g09600.t01	Wine grape	cytosol	37.77	38.39
TraesCS7D01G435500.1	Wheat	cytosol	13.85	22.06
TraesCS7D01G435400.1	Wheat	cytosol	13.85	22.0
TraesCS4D01G145700.1	Wheat	cytosol	12.23	21.12
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	16.01	17.49
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	15.83	16.24
TraesCS7D01G496500.1	Wheat	nucleus	17.63	15.05
TraesCS5D01G324200.2	Wheat	nucleus	17.63	14.94
TraesCS7D01G500800.1	Wheat	mitochondrion	15.47	9.75
TraesCS2D01G446600.2	Wheat	mitochondrion	15.47	9.7

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009628
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2
SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS2D01G235100	EnsemblPlants:TraesCS2D01G235100.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr2D:+:220344323..220369735

Molecular Weight (calculated)

62435.2 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.621

Length

556 amino acids

Sequence
(BLAST)

001: MGAITSAELN FLVFRYLQES GFVHAAFTLG YEAGIHKGGI DGNVVPPGAL ITIVQKGLQY IELEANTDEN DQEVEKDFAL LEPLEIITKD VEELQQIVKK
101: RKRERLQIDC DKDKGKAKEC IEEHEHRLGG ERERERHDKE KDQEMERDRT ERDKVQEKEK EREKQHTEHI DKVKHEEDPL ASGGPKPMDV STTPHEIFSA
201: DVTVLEGHSS EVFACAWSPA GSLLASGSGD STARIWTIPD GPCGSIQSSP ASGHVLKHFK GRTNEKSKDV TTLDWNGEGT LLATGSYDGQ ARIWSRDGEL
301: KQTLFKHKGP IFSLKWNRKG DFLLSGSVDK TAIVWDTKTW ECKQQFEFHS APTLDVDWRN NNSFATCSTD NMIYVCKIGD PRPVKTFSGH QSEVNAIKWD
401: PTGSLLASCS DDWTAKIWSV KQDKCVYDFK EHTKEIYTIR WSPTGPGTNN PNQQLLLASA SFDSSIKLWE VEKGHLLYSL AGHRQPVYSV AFSPDGEYLA
501: SGSLDQSLHI WSVKEGRILK TFRGSGGIFE VCWNKEGSKI AACFSNNTVC VMDFRM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.