Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G324200.2 | Wheat | nucleus | 98.46 | 97.71 |
| TraesCS7A01G508300.2 | Wheat | nucleus | 98.0 | 97.26 |
| HORVU0Hr1G022460.1 | Barley | nucleus | 72.66 | 96.73 |
| HORVU7Hr1G113760.2 | Barley | nucleus | 97.23 | 96.49 |
| Zm00001d044810_P001 | Maize | nucleus | 18.13 | 91.47 |
| Os06t0649500-01 | Rice | nucleus | 87.1 | 86.7 |
| KXG20501 | Sorghum | nucleus | 87.1 | 86.3 |
| Zm00001d046810_P002 | Maize | nucleus | 87.25 | 84.4 |
| GSMUA_Achr9P22400_001 | Banana | cytosol | 21.66 | 82.46 |
| Zm00001d053142_P001 | Maize | nucleus | 19.82 | 80.12 |
| Zm00001d025112_P001 | Maize | cytosol, nucleus, plastid | 21.51 | 76.5 |
| VIT_04s0008g05780.t01 | Wine grape | nucleus | 73.58 | 70.86 |
| Zm00001d016330_P001 | Maize | extracellular | 15.67 | 70.34 |
| KRH52333 | Soybean | nucleus | 69.74 | 68.48 |
| KRH61671 | Soybean | nucleus | 69.74 | 67.86 |
| AT5G25150.1 | Thale cress | nucleus | 68.97 | 67.12 |
| CDY19814 | Canola | nucleus | 68.51 | 66.77 |
| Bra036534.1-P | Field mustard | nucleus | 68.51 | 66.77 |
| CDX87098 | Canola | nucleus | 67.9 | 66.17 |
| Solyc06g065700.2.1 | Tomato | nucleus | 69.12 | 65.69 |
| GSMUA_Achr9P22410_001 | Banana | cytosol | 37.33 | 65.15 |
| KRH05348 | Soybean | nucleus | 65.75 | 65.05 |
| CDY05473 | Canola | nucleus | 66.21 | 64.71 |
| Bra020485.1-P | Field mustard | nucleus | 65.75 | 64.26 |
| CDY05378 | Canola | nucleus | 65.44 | 64.16 |
| KRG99418 | Soybean | cytosol, extracellular, plastid | 8.45 | 63.22 |
| GSMUA_Achr7P26980_001 | Banana | nucleus | 73.43 | 62.57 |
| KRH15679 | Soybean | cytosol | 9.83 | 50.39 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 11.98 | 24.22 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 11.67 | 21.78 |
| TraesCS7D01G435400.1 | Wheat | cytosol | 11.21 | 20.86 |
| TraesCS4D01G160600.1 | Wheat | cytosol, nucleus | 15.82 | 20.24 |
| TraesCS2D01G182600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 16.13 | 19.37 |
| TraesCS2D01G235100.1 | Wheat | nucleus | 15.05 | 17.63 |
| TraesCS2D01G446600.2 | Wheat | mitochondrion | 18.89 | 13.87 |
| TraesCS7D01G500800.1 | Wheat | mitochondrion | 18.74 | 13.83 |
Protein Annotations
| Gene3D:1.25.40.500 | MapMan:15.3.4.3.1 | MapMan:15.3.5.3.5 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| InterPro:IPR037264 | PFAM:PF00400 | PFAM:PF04494 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19879 | SMART:SM00320 | SUPFAM:SSF160897 | SUPFAM:SSF50978 | InterPro:TFIID_NTD2 |
| InterPro:TFIID_NTD2_sf | EnsemblPlantsGene:TraesCS7D01G496500 | EnsemblPlants:TraesCS7D01G496500.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | TIGR:cd08044 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:-:603359373..603375960
Molecular Weight (calculated)
72644.0 Da
IEP (calculated)
6.614
GRAVY (calculated)
-0.411
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEEMERKV PQYLHRKGFR LTELALQEER NRLSTTSLSD VSLSRPDNDP ARYYDGYNKL RSWAYNSLDQ YKDWKLRVLY PAFIHCFMDL VSEGHTLEAR
101: AFFLKFREDH ELMHSRDLQK LEGTLSPLHL EEMDLARSLR ENKFRIKLCE YSYELLLQYL QKTQALVMLG IINERIIFEV SAGQPSLISD DADVVALVGT
201: SKDLAKQINQ KEVHWGLLED SVEERMEKAL SDSDRAEGES KDADAEDNNK KKSSEGGKQG GPLNKKLKKD KLVGATGKNT KSETSMISAA PRVKPELTLP
301: ATPVEVEQSI LEDLRNRAQL NNLALLSVSF YTFLNTHNGL NCSSISNDGS LVVGGLSDSS VKVWDMAKIG QPAKTSSSQG ENGSSQDERL SSTSEGKRPY
401: TLFQGHSGPV YSAAFSPFGD FLLSSSSDST IRLWSTKLNA NLVCYKGHNY WDVQFSPVGH YFASASHDRT ARIWSMDKIQ PLRIMAGHLA DVDCVQWHVN
501: CNYIATGSSD KTVRLWDVQT GECIRMFIGH RSMVLSLAMS PDGRYMASGD EDGTIMMWDL STGSCVSPLA GHNSCVWSLA FSCEGALLAS GSADCTVKLW
601: DVASSTKALK MDDTSTNRLR LLKALPTKST PVYNLRFSRR NLLFASGALS L
101: AFFLKFREDH ELMHSRDLQK LEGTLSPLHL EEMDLARSLR ENKFRIKLCE YSYELLLQYL QKTQALVMLG IINERIIFEV SAGQPSLISD DADVVALVGT
201: SKDLAKQINQ KEVHWGLLED SVEERMEKAL SDSDRAEGES KDADAEDNNK KKSSEGGKQG GPLNKKLKKD KLVGATGKNT KSETSMISAA PRVKPELTLP
301: ATPVEVEQSI LEDLRNRAQL NNLALLSVSF YTFLNTHNGL NCSSISNDGS LVVGGLSDSS VKVWDMAKIG QPAKTSSSQG ENGSSQDERL SSTSEGKRPY
401: TLFQGHSGPV YSAAFSPFGD FLLSSSSDST IRLWSTKLNA NLVCYKGHNY WDVQFSPVGH YFASASHDRT ARIWSMDKIQ PLRIMAGHLA DVDCVQWHVN
501: CNYIATGSSD KTVRLWDVQT GECIRMFIGH RSMVLSLAMS PDGRYMASGD EDGTIMMWDL STGSCVSPLA GHNSCVWSLA FSCEGALLAS GSADCTVKLW
601: DVASSTKALK MDDTSTNRLR LLKALPTKST PVYNLRFSRR NLLFASGALS L
001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
Arabidopsis Description
TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.