Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G040600.1 | Wheat | cytosol, mitochondrion | 90.42 | 91.71 |
| TraesCS7D01G036000.1 | Wheat | mitochondrion | 86.76 | 90.59 |
| Os03t0603300-01 | Rice | cytosol, plastid | 41.97 | 53.41 |
| HORVU7Hr1G006990.9 | Barley | mitochondrion, plastid | 58.31 | 52.67 |
| GSMUA_Achr9P26740_001 | Banana | nucleus | 35.21 | 38.23 |
| GSMUA_Achr11P... | Banana | nucleus | 36.9 | 36.29 |
| VIT_08s0040g01420.t01 | Wine grape | cytosol, nucleus, plastid | 35.21 | 33.97 |
| GSMUA_Achr9P09310_001 | Banana | nucleus | 31.55 | 33.63 |
| KRH32528 | Soybean | cytosol | 33.24 | 33.15 |
| KRH19914 | Soybean | cytosol | 32.68 | 32.77 |
| VIT_14s0068g00340.t01 | Wine grape | nucleus | 34.08 | 32.1 |
| Solyc09g008150.1.1 | Tomato | nucleus | 31.83 | 30.29 |
| KRH01313 | Soybean | cytosol | 32.39 | 30.18 |
| PGSC0003DMT400009911 | Potato | nucleus | 31.27 | 29.68 |
| KRH45059 | Soybean | cytosol | 30.99 | 28.87 |
| AT4G34340.1 | Thale cress | nucleus | 27.04 | 27.2 |
| CDX75423 | Canola | nucleus | 26.2 | 26.8 |
| Bra011521.1-P | Field mustard | nucleus | 25.92 | 26.59 |
| Bra008690.1-P | Field mustard | nucleus | 25.63 | 25.14 |
| CDY69783 | Canola | nucleus | 25.35 | 25.07 |
| Bra039159.1-P | Field mustard | nucleus | 26.48 | 24.93 |
| CDY60474 | Canola | nucleus | 25.92 | 24.4 |
| CDY43254 | Canola | nucleus | 24.51 | 24.17 |
| Bra023525.1-P | Field mustard | cytosol | 25.07 | 23.61 |
| AT3G02160.1 | Thale cress | cytosol | 26.2 | 23.43 |
| CDX74271 | Canola | cytosol | 23.38 | 22.13 |
| AT5G15570.1 | Thale cress | nucleus | 23.66 | 22.05 |
| Bra001033.1-P | Field mustard | cytosol | 23.1 | 21.69 |
| CDX91978 | Canola | cytosol, extracellular, nucleus | 23.66 | 21.59 |
Protein Annotations
| EnsemblPlants:TraesCSU01G065200.1 | EnsemblPlantsGene:TraesCSU01G065200 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:BTP | InterPro:Histone-fold | InterPro:IPR009072 | InterPro:TFIID_su8_C | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF45 | PFAM:PF07524 | PFAM:PF10406 | SEG:seg | SMART:SM00576 | TIGR:cd08049 |
| MapMan:15.3.5.3.8 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:50832541..50833608
Molecular Weight (calculated)
37856.9 Da
IEP (calculated)
7.561
GRAVY (calculated)
-0.425
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGPDEF GRAAARAAVA RALQAAGFAS ATRSAVDALA DVLLRYLRLL GGAANAHANL AGRTAPNELD VLRFLEETGE AYQGFEGASS TRGCLVGSGV
101: VRDLVAFAGD ADDKPLSARR PLPRFPVRHD PPPSRSCASF AALGRGSGMR HVPEWLPAFP EPHTYAVAEE ESGEMVGGSS AAVDEVEQVW RQRKAEKSLL
201: GLQRQLALAG GNGIRPAAVV EEGAGKGKEL DRAVVKSNPF IQSALRCGDK EVSEVAMPNL GKKHSVLDEF APAFAESEGE GLDEGRRDQD QGGGRKRMVP
301: KERPPVYFRI GPDRKSRVMA LNSRALVDRK DPWFLEDDGK RRALSILAEP MEKPG
101: VRDLVAFAGD ADDKPLSARR PLPRFPVRHD PPPSRSCASF AALGRGSGMR HVPEWLPAFP EPHTYAVAEE ESGEMVGGSS AAVDEVEQVW RQRKAEKSLL
201: GLQRQLALAG GNGIRPAAVV EEGAGKGKEL DRAVVKSNPF IQSALRCGDK EVSEVAMPNL GKKHSVLDEF APAFAESEGE GLDEGRRDQD QGGGRKRMVP
301: KERPPVYFRI GPDRKSRVMA LNSRALVDRK DPWFLEDDGK RRALSILAEP MEKPG
001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM
Arabidopsis Description
At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.