CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01313	Soybean	cytosol	94.23	94.23
VIT_14s0068g00340.t01	Wine grape	nucleus	52.49	53.05
GSMUA_Achr9P26740_001	Banana	nucleus	35.96	41.9
GSMUA_Achr11P...	Banana	nucleus	38.85	41.0
KRH19914	Soybean	cytosol	35.43	38.14
GSMUA_Achr9P09310_001	Banana	nucleus	33.07	37.84
Zm00001d041530_P001	Maize	cytosol	34.65	36.97
KRH32528	Soybean	cytosol	33.86	36.24
EES17247	Sorghum	cytosol	34.65	35.87
Zm00001d041766_P001	Maize	cytosol	34.38	35.41
EES15849	Sorghum	cytosol	34.91	35.37
Os12t0574800-02	Rice	nucleus	33.6	34.97
TraesCS5B01G084700.1	Wheat	cytosol	33.07	34.81
TraesCS5A01G081700.1	Wheat	cytosol	33.07	34.81
KRH27180	Soybean	plastid	14.7	34.78
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	32.81	34.72
CDY60474	Canola	nucleus	31.76	32.1
TraesCS7D01G036000.1	Wheat	mitochondrion	28.61	32.06
Bra039159.1-P	Field mustard	nucleus	31.5	31.83
Bra008690.1-P	Field mustard	nucleus	30.18	31.77
CDY43254	Canola	nucleus	29.92	31.67
TraesCSU01G065200.1	Wheat	cytosol	28.87	30.99
AT5G15570.1	Thale cress	nucleus	30.97	30.97
AT3G02160.1	Thale cress	cytosol	31.76	30.48
Os03t0603300-01	Rice	cytosol, plastid	22.31	30.47
Bra001033.1-P	Field mustard	cytosol	30.18	30.42
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	27.56	30.0
CDX74271	Canola	cytosol	29.13	29.6
CDX91978	Canola	cytosol, extracellular, nucleus	30.18	29.56
Bra023525.1-P	Field mustard	cytosol	29.13	29.44
KRH17259	Soybean	plastid	18.11	25.27
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	25.2	24.43
KRH72903	Soybean	cytosol	17.59	23.1

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100778210	MapMan:15.3.5.3.8	EMBL:ACUP02004986	InterPro:BTP	EnsemblPlantsGene:GLYMA_08G247400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1KWG4
InterPro:IPR009072	EnsemblPlants:KRH45059	ProteinID:KRH45059	ProteinID:KRH45059.1	PFAM:PF07524	PFAM:PF10406
PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI0002337F79

Description

hypothetical protein

Coordinates

chr8:+:21428879..21430967

Molecular Weight (calculated)

41888.6 Da

IEP (calculated)

5.115

GRAVY (calculated)

-0.485

Length

381 amino acids

Sequence
(BLAST)

001: MSNGGGKTGR QLEQPGTWGR RKVGGGDDYA RAIAKIAVAQ VCESEGFQAF QQSALEALSD VVARYILNVG KSAHCHANLS GRTECHAFDV IQGLEDMGSV
101: QGFAGASDVD HCLESSGVIR EIVHFVNDAE PVMFAHPIPQ FPVVKERVPN PSFLQKGEEP PGEHIPAWLP AFPDLQTYSE SPVVNGRGTE PRAVKFDQER
201: ENGKGEWPAM NFQQQMVSNM FEKSALIDPA DAKAKRVAAE GNPFLAAPLK IEDKEVASVP PPAKLFNDVA LDNPVVENFV ENEPISAMET FAPAIEAMKS
301: TCCDSNEDQT KFRANEKPTV RFKIGIKNKL LGKSIGLIPQ KEEHKNTLPW FAMEDGKDDR KRRAEKILRE SLENPDQLVQ L

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.