Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G084700.1 | Wheat | cytosol | 99.17 | 99.17 |
| TraesCS5D01G090900.1 | Wheat | cytosol, nucleus, plastid | 98.07 | 98.61 |
| Zm00001d041530_P001 | Maize | cytosol | 76.52 | 77.59 |
| Os12t0574800-02 | Rice | nucleus | 77.62 | 76.78 |
| EES15849 | Sorghum | cytosol | 79.01 | 76.06 |
| EES17247 | Sorghum | cytosol | 76.52 | 75.27 |
| Zm00001d041766_P001 | Maize | cytosol | 73.76 | 72.16 |
| TraesCS7A01G040600.1 | Wheat | cytosol, mitochondrion | 52.76 | 54.57 |
| GSMUA_Achr9P26740_001 | Banana | nucleus | 42.82 | 47.4 |
| GSMUA_Achr11P... | Banana | nucleus | 43.37 | 43.49 |
| VIT_08s0040g01420.t01 | Wine grape | cytosol, nucleus, plastid | 40.06 | 39.4 |
| GSMUA_Achr9P09310_001 | Banana | nucleus | 35.91 | 39.04 |
| KRH19914 | Soybean | cytosol | 37.29 | 38.14 |
| VIT_14s0068g00340.t01 | Wine grape | nucleus | 38.12 | 36.6 |
| KRH32528 | Soybean | cytosol | 35.91 | 36.52 |
| Solyc09g008150.1.1 | Tomato | nucleus | 37.57 | 36.46 |
| PGSC0003DMT400009911 | Potato | nucleus | 37.02 | 35.83 |
| KRH01313 | Soybean | cytosol | 35.64 | 33.86 |
| AT4G34340.1 | Thale cress | nucleus | 32.87 | 33.71 |
| KRH45059 | Soybean | cytosol | 34.81 | 33.07 |
| CDY69783 | Canola | nucleus | 31.49 | 31.75 |
| CDX75423 | Canola | nucleus | 30.39 | 31.7 |
| Bra011521.1-P | Field mustard | nucleus | 29.83 | 31.21 |
| Bra008690.1-P | Field mustard | nucleus | 27.62 | 27.62 |
| Bra023525.1-P | Field mustard | cytosol | 28.73 | 27.59 |
| Bra039159.1-P | Field mustard | nucleus | 27.07 | 25.99 |
| CDY60474 | Canola | nucleus | 26.8 | 25.73 |
| AT5G15570.1 | Thale cress | nucleus | 26.8 | 25.46 |
| CDX74271 | Canola | cytosol | 26.24 | 25.33 |
| CDY43254 | Canola | nucleus | 25.14 | 25.28 |
| Bra001033.1-P | Field mustard | cytosol | 26.24 | 25.13 |
| AT3G02160.1 | Thale cress | cytosol | 27.35 | 24.94 |
| CDX91978 | Canola | cytosol, extracellular, nucleus | 26.24 | 24.42 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G081700.1 | EnsemblPlantsGene:TraesCS5A01G081700 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:BTP | InterPro:Histone-fold | InterPro:IPR009072 | InterPro:TFIID_su8_C | ncoils:Coil |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF45 | PFAM:PF07524 | PFAM:PF10406 | SEG:seg | SMART:SM00576 |
| TIGR:cd08049 | MapMan:15.3.5.3.8 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:105688185..105689273
Molecular Weight (calculated)
39238.5 Da
IEP (calculated)
6.644
GRAVY (calculated)
-0.439
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDRAGTSGS GSGSGDEFGR AVARAAVAQA LEAAGFDCTH RSAVDALVDV LLRYLTHLGR AAAFHANLAG RALANEYDII QSLEEIGTDF DGFAGAGTSG
101: RCLVGSGVVK DLMAFVDSKD EVPFTRPLPK FPIPRAPQPT PSFAVAERET GMRHVPEWLP AFPDPHTYVR TEVWSEQAAK DRVDMVEQVR QRRKAEKSLL
201: SLQQRLALAG ADGFRPAVSE DSAAKGKEIQ PAGSKRNPFL EPALPHGDKE VSEVDIPSER KKLSVLDAFA PAIQGANAME LDSGTGWDQN QNQKSIVPKV
301: RAPVHLKIGV NKKPLAVALN SNSMDLREDP SFLKEEQKDD RKRRAGMILR ASMDNPQELP QI
101: RCLVGSGVVK DLMAFVDSKD EVPFTRPLPK FPIPRAPQPT PSFAVAERET GMRHVPEWLP AFPDPHTYVR TEVWSEQAAK DRVDMVEQVR QRRKAEKSLL
201: SLQQRLALAG ADGFRPAVSE DSAAKGKEIQ PAGSKRNPFL EPALPHGDKE VSEVDIPSER KKLSVLDAFA PAIQGANAME LDSGTGWDQN QNQKSIVPKV
301: RAPVHLKIGV NKKPLAVALN SNSMDLREDP SFLKEEQKDD RKRRAGMILR ASMDNPQELP QI
001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL
Arabidopsis Description
TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.