Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G242900.1 | Wheat | nucleus | 92.12 | 96.98 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 91.41 | 96.35 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 86.28 | 91.29 |
| Os02t0654400-01 | Rice | nucleus | 60.74 | 69.92 |
| KXG31790 | Sorghum | nucleus | 55.85 | 63.41 |
| Zm00001d039729_P004 | Maize | nucleus | 57.52 | 62.35 |
| Zm00001d039731_P002 | Maize | nucleus | 35.08 | 55.89 |
| CDX71498 | Canola | cytosol | 6.44 | 50.94 |
| CDX71499 | Canola | nucleus | 9.31 | 49.06 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 37.83 | 36.1 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 35.68 | 35.55 |
| CDY46486 | Canola | nucleus, plastid | 3.58 | 34.09 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 34.25 | 33.92 |
| CDY22365 | Canola | nucleus | 30.07 | 32.56 |
| Bra033662.1-P | Field mustard | nucleus | 29.95 | 32.56 |
| CDY25235 | Canola | nucleus | 30.07 | 32.02 |
| Bra035961.1-P | Field mustard | nucleus | 29.71 | 31.96 |
| CDY30789 | Canola | mitochondrion | 29.12 | 29.98 |
| AT5G43130.2 | Thale cress | nucleus | 30.31 | 29.81 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 32.82 | 29.7 |
| KRH61389 | Soybean | nucleus | 31.62 | 28.96 |
| KRH52077 | Soybean | nucleus | 31.62 | 28.4 |
| Solyc04g078050.2.1 | Tomato | nucleus | 31.38 | 28.16 |
| KRH15434 | Soybean | nucleus | 30.79 | 27.59 |
| AT1G27720.1 | Thale cress | nucleus | 23.03 | 26.81 |
| KRH05606 | Soybean | mitochondrion | 30.79 | 26.43 |
| CDY60273 | Canola | nucleus | 22.55 | 26.32 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 23.15 | 24.16 |
| CDY68956 | Canola | nucleus | 15.63 | 23.82 |
| CDY03944 | Canola | nucleus | 22.55 | 22.24 |
| PGSC0003DMT400055395 | Potato | nucleus | 10.26 | 14.68 |
| CDY58727 | Canola | peroxisome | 1.31 | 11.11 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G225200.2 | EnsemblPlantsGene:TraesCS6D01G225200 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:RST | InterPro:TAF4 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 |
| PFAM:PF05236 | PFAM:PF12174 | SEG:seg | TIGR:cd08045 | MapMan:15.3.5.3.4 | : |
Description
No Description!
Coordinates
chr6D:-:317007387..317015060
Molecular Weight (calculated)
91651.7 Da
IEP (calculated)
9.835
GRAVY (calculated)
-0.865
Length
838 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPPPESVG DAGAPSSSDA CWHASLPFPP FFGVEAFVAG FRAVLLLSGL FGIMEEIFIL GTLPQDISDV SKSTVDQLQA ADQKASGQSI QQAGQPHMNP
101: SYQLSQPKLE TGVSENENFI QQEEHHYQPE QEQPRCENQL QQAEANSFQL AEKGTDYVGQ QSLTGSMEDV AQPSGDQQHV NPVVGQQAPH GAQETRKRGY
201: QPSIPFNMLI PILQAHLDRD KDMQLQSVWA KLRRNEVHKD DFLRVIRNIV GDQMLKQAAH KVFAQMQAQA QRNNNQGNAN QHPSSSLAST AASGSAKLPD
301: QLVRMPTPPN QGHKSQASSS PQNFVPLSGT QMQSSMHYFA HDNSIQKPDV KGVHAVPNRP PGMSLPIPLQ TSNKQLQPTE IQQASQQLYG TTNTPQSYPR
401: PTSGSMPLRP QSQAPETRPP FHPHGRIPAK IGTVPTHPTM QQNASARQMQ QNKDIKNNAY NPSANTKQGS EPAGKARQVG PGGPSAKLQG KQAAPKTSTP
501: PAARTKKSGG QKKSLETAGS APPPTSKRQK TAGAFQEQSI DQLNDVTAVS GVNLREEEEQ LLSAPKEESP ATEAARRIVQ EEEENLFLQK GPLLKKLAEI
601: VLKSNLKNAG ADVGRCLSMC VEERLRRFIS TLIRVSKQRT DAEKTGHRLV ITSDVGRQIL QMNQKAKEEW DKKQAETDKN KKQTEDGGSG GAELEKEKEE
701: SRPKNAKPNK EEDDKMRTTA ANVAARQAVG GSDMFSKWQL MAEQAKQKRA PAPRPSHVSG KGSAERSEAS KRSHLAAFGT GGTERQGKGL FANRHSHGPQ
801: RTVSVKDVIC VLEREPQMTK SRLIYRLYER LPGESTTD
101: SYQLSQPKLE TGVSENENFI QQEEHHYQPE QEQPRCENQL QQAEANSFQL AEKGTDYVGQ QSLTGSMEDV AQPSGDQQHV NPVVGQQAPH GAQETRKRGY
201: QPSIPFNMLI PILQAHLDRD KDMQLQSVWA KLRRNEVHKD DFLRVIRNIV GDQMLKQAAH KVFAQMQAQA QRNNNQGNAN QHPSSSLAST AASGSAKLPD
301: QLVRMPTPPN QGHKSQASSS PQNFVPLSGT QMQSSMHYFA HDNSIQKPDV KGVHAVPNRP PGMSLPIPLQ TSNKQLQPTE IQQASQQLYG TTNTPQSYPR
401: PTSGSMPLRP QSQAPETRPP FHPHGRIPAK IGTVPTHPTM QQNASARQMQ QNKDIKNNAY NPSANTKQGS EPAGKARQVG PGGPSAKLQG KQAAPKTSTP
501: PAARTKKSGG QKKSLETAGS APPPTSKRQK TAGAFQEQSI DQLNDVTAVS GVNLREEEEQ LLSAPKEESP ATEAARRIVQ EEEENLFLQK GPLLKKLAEI
601: VLKSNLKNAG ADVGRCLSMC VEERLRRFIS TLIRVSKQRT DAEKTGHRLV ITSDVGRQIL QMNQKAKEEW DKKQAETDKN KKQTEDGGSG GAELEKEKEE
701: SRPKNAKPNK EEDDKMRTTA ANVAARQAVG GSDMFSKWQL MAEQAKQKRA PAPRPSHVSG KGSAERSEAS KRSHLAAFGT GGTERQGKGL FANRHSHGPQ
801: RTVSVKDVIC VLEREPQMTK SRLIYRLYER LPGESTTD
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.