Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P14210_001 | Banana | nucleus | 59.34 | 61.95 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 3.99 | 51.47 |
| KXG31790 | Sorghum | nucleus | 36.33 | 43.22 |
| Os02t0654400-01 | Rice | nucleus | 35.31 | 42.58 |
| Os03t0441000-01 | Rice | nucleus | 38.84 | 41.64 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 38.61 | 40.5 |
| Zm00001d039729_P004 | Maize | nucleus | 35.65 | 40.49 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 38.84 | 40.16 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 35.99 | 39.9 |
| OQU92338 | Sorghum | nucleus | 40.89 | 39.84 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 38.15 | 39.6 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 35.76 | 39.5 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 35.76 | 39.45 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 37.47 | 37.86 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 36.1 | 37.83 |
| Zm00001d029598_P003 | Maize | nucleus | 38.5 | 36.42 |
| Zm00001d039731_P002 | Maize | nucleus | 17.88 | 29.85 |
Protein Annotations
| MapMan:15.3.5.3.4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G03380_001 | EnsemblPlants:GSMUA_Achr4P03380_001 | EnsemblPlants:GSMUA_Achr4T03380_001 | UniProt:M0SKQ5 |
| PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 | InterPro:RST | InterPro:TAF4 |
| UniParc:UPI0002969715 | SEG:seg | : | : | : | : |
Description
transcription initiation factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G03380_001]
Coordinates
chr4:-:2690614..2701439
Molecular Weight (calculated)
96015.2 Da
IEP (calculated)
9.140
GRAVY (calculated)
-0.822
Length
878 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIMKLLE EDEDESMHSG ADVEALSAAL NRDIGGDPAA LARPPESDTG VSMLGSSSAS KQVLGQWQTS SEVENEQQIQ QKEQKRHLQS SEQHSSGGEL
101: IQAGSVSQPQ DEQINNQPQH DCPTIQQEAS HSDDLQRQPE ANLLEKEQVK KPEQNTIQAS DINQQQHIVQ QSNSQQIPTS NQANMAMRRT KAASSIPFHL
201: LIPILRPHLD KDRSMQLQAI FAKLRNNEVS KEDFLRVIRN IVGDQMLRQA AQKVQAQAAR GAQTNTNSFS LQSQASSQQL ASSLTAPDNS TQKPREVETK
301: SDGKGAQSVQ NYTSNTNITN PERDVSMVSL QPVNKQQHHA QLPQSSFSVS GATSSYNTHA YPRPSMSSST SIRPQNLDSH ARQVSVTPGA VSTQLRPTQS
401: VSVINVPKYE QNPANEAKRQ QVGSVTASQH NPIAWQLSAN KDQKGNTFPS MAVKQELVDQ SSEPPNKSHF ASSESTLFGS AHVNQGNHAL GSSSTTGTTQ
501: ISGSVPSQVD QIVQLHSHIS SATPPLGGAT AKTPSKKPSV GQKKLFEAPG SSPPMPSKKQ KTSGTSLDQS IEQLNDVTAV SGVNLREEEE QLLSGLKEES
601: RASEATRRIV QEEEERLLLL KAPLQRKLSD IMLKCGLKNI GGDVERCLSM CVEERLKGLI SYLIRLSKQR VDIEKSRHRF VITSDVRRQI LLANQKTKEE
701: WDKKQAEESE KLRKVNEMDG NTGVDAEKDK EDGRPKALKA NKEEDDKMRA TAANVAARAA VGGDDMLSKW QLMAEQARQK REGLDGAPGK TASSKPLLSL
801: GRSSREKQES EKKGSSAVSA SGGTRRFGRK NALESHPKVA RNVSLKDVIA ALEREPQMSK SALIYRLYER LSSNSSAT
101: IQAGSVSQPQ DEQINNQPQH DCPTIQQEAS HSDDLQRQPE ANLLEKEQVK KPEQNTIQAS DINQQQHIVQ QSNSQQIPTS NQANMAMRRT KAASSIPFHL
201: LIPILRPHLD KDRSMQLQAI FAKLRNNEVS KEDFLRVIRN IVGDQMLRQA AQKVQAQAAR GAQTNTNSFS LQSQASSQQL ASSLTAPDNS TQKPREVETK
301: SDGKGAQSVQ NYTSNTNITN PERDVSMVSL QPVNKQQHHA QLPQSSFSVS GATSSYNTHA YPRPSMSSST SIRPQNLDSH ARQVSVTPGA VSTQLRPTQS
401: VSVINVPKYE QNPANEAKRQ QVGSVTASQH NPIAWQLSAN KDQKGNTFPS MAVKQELVDQ SSEPPNKSHF ASSESTLFGS AHVNQGNHAL GSSSTTGTTQ
501: ISGSVPSQVD QIVQLHSHIS SATPPLGGAT AKTPSKKPSV GQKKLFEAPG SSPPMPSKKQ KTSGTSLDQS IEQLNDVTAV SGVNLREEEE QLLSGLKEES
601: RASEATRRIV QEEEERLLLL KAPLQRKLSD IMLKCGLKNI GGDVERCLSM CVEERLKGLI SYLIRLSKQR VDIEKSRHRF VITSDVRRQI LLANQKTKEE
701: WDKKQAEESE KLRKVNEMDG NTGVDAEKDK EDGRPKALKA NKEEDDKMRA TAANVAARAA VGGDDMLSKW QLMAEQARQK REGLDGAPGK TASSKPLLSL
801: GRSSREKQES EKKGSSAVSA SGGTRRFGRK NALESHPKVA RNVSLKDVIA ALEREPQMSK SALIYRLYER LSSNSSAT
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.