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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 1
  • mitochondrion 1
PPI
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G281300.1 Wheat nucleus 96.73 96.86
TraesCS6D01G225200.2 Wheat endoplasmic reticulum, nucleus, peroxisome, plastid 96.98 92.12
HORVU6Hr1G062340.1 Barley nucleus 91.46 91.92
Os02t0654400-01 Rice nucleus 63.57 69.51
KXG31790 Sorghum nucleus 58.67 63.28
Zm00001d039729_P004 Maize nucleus 60.43 62.23
Zm00001d039731_P002 Maize nucleus 37.19 56.27
CDX71498 Canola cytosol 6.78 50.94
CDX71499 Canola nucleus 9.67 48.43
GSMUA_Achr4P03380_001 Banana nucleus 39.45 35.76
GSMUA_Achr4P14210_001 Banana nucleus 37.56 35.55
CDY46486 Canola nucleus, plastid 3.77 34.09
TraesCS4A01G163100.1 Wheat nucleus 35.55 33.81
CDY22365 Canola nucleus 31.53 32.43
Bra033662.1-P Field mustard nucleus 31.41 32.43
CDY25235 Canola nucleus 31.28 31.64
Bra035961.1-P Field mustard nucleus 30.9 31.58
CDY30789 Canola mitochondrion 30.28 29.61
VIT_18s0001g09310.t01 Wine grape nucleus 34.3 29.48
AT5G43130.2 Thale cress nucleus 31.53 29.46
KRH61389 Soybean nucleus 33.04 28.74
KRH52077 Soybean nucleus 33.04 28.19
Solyc04g078050.2.1 Tomato nucleus 32.91 28.05
KRH15434 Soybean nucleus 32.41 27.59
AT1G27720.1 Thale cress nucleus 24.12 26.67
KRH05606 Soybean mitochondrion 32.54 26.54
CDY60273 Canola nucleus 23.37 25.91
Bra030061.1-P Field mustard mitochondrion, nucleus 24.0 23.79
CDY68956 Canola nucleus 16.21 23.45
CDY03944 Canola nucleus 23.37 21.88
PGSC0003DMT400055395 Potato nucleus 10.8 14.68
CDY58727 Canola peroxisome 1.26 10.1
Protein Annotations
EnsemblPlants:TraesCS6A01G242900.1EnsemblPlantsGene:TraesCS6A01G242900GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005654GO:GO:0005669GO:GO:0006139GO:GO:0006352GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987InterPro:RSTInterPro:TAF4PANTHER:PTHR15138PANTHER:PTHR15138:SF16
PFAM:PF05236PFAM:PF12174SEG:segTIGR:cd08045MapMan:15.3.5.3.4:
Description
No Description!
Coordinates
chr6A:-:454649471..454657871
Molecular Weight (calculated)
86893.6 Da
IEP (calculated)
9.991
GRAVY (calculated)
-0.983
Length
796 amino acids
Sequence
(BLAST)
001: MSSPPPEAVG DAGAPSSSGT LPQDISDVSK STVGQLQAAD QEASSQSSQQ AGQPHMNPSY QLSQPKLETG VSENENFIQQ EEHHYQPEQE QPRCENQVQQ
101: AETNSFQLAE KGTDYVGQQS LTGSMVDVAQ PSGDQQHVNP VVGQQAPHGA QETRKRGYQP SIPFNMLIPI LQAHLDRDKD MQLQSVWAKL RRNEVHKDDF
201: LRVIRNIVGD QMLKQAAHKV FAQMQAQAQR NNNQGNANQH PSSSLASTAA SGSAKLPDQL VRMPTPPNQG HKSQGSSSPQ NFVPLSGTQM QSSMHYFAHD
301: NSIQKPDVKG VHAVPNRPPG MSLPIPLQTS NKQLQPTEIQ QASQQLYGTT NTPQSYPRPT SGSMPLRPQS QAPETRPPFH PHGRIPAKIG TVPTHPTMQQ
401: NASARPMQQN KDIKNNAYNP SANTKQGSEP AGKARQVGPG GPSAKSQGKQ AAPKTSTPPA ARTKKSGGQK KSLETAGSAP PPTSKRQKTA GAFQEQSIDQ
501: LNDVTAVSGV NLREEEEQLL SAPKEESAAT EAARRIVQEE EENLFLQKGP LLKKLAEIVL KSNLKNADAD VGRCLSMCVE ERLRRFISTL IRVSKQRTDA
601: EKTGHRLVIT SDVGRQILQM NQKAKEEWDK KQAETDKNKK QTEDGSSGGA ELEKEKEESR PKNAKPNKEE DDKMRTTAAN VAARQAVGGS DMFSKWQLMA
701: EQAKQKRAPA PRPSHASGKG SAERSEASKR SHLAAFGTGG TERQGKGSFA NRHSHGPQRT VSVKDVICVL EREPQMTKSR LIYRLYERLP GESTTD
Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.