CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033662.1-P	Field mustard	nucleus	96.25	96.63
CDX71499	Canola	nucleus	18.99	92.45
CDY30789	Canola	mitochondrion	89.66	85.26
CDY46486	Canola	nucleus, plastid	9.69	85.23
CDX71498	Canola	cytosol	10.59	77.36
CDY25235	Canola	nucleus	76.61	75.35
AT5G43130.2	Thale cress	nucleus	79.97	72.65
CDY68956	Canola	nucleus	51.03	71.82
CDX71497	Canola	plastid	8.01	60.78
GSMUA_Achr4P14200_001	Banana	cytosol	4.26	48.53
CDY58727	Canola	peroxisome	6.07	47.47
CDY60273	Canola	nucleus	37.34	40.25
CDY03944	Canola	nucleus	38.5	35.06
Os03t0441000-01	Rice	nucleus	37.08	35.04
TraesCS4A01G163100.1	Wheat	nucleus	37.6	34.77
TraesCS4D01G160000.1	Wheat	nucleus	37.47	34.28
TraesCS4B01G150300.3	Wheat	nucleus	37.6	34.28
KXG31790	Sorghum	nucleus	32.3	33.88
Os02t0654400-01	Rice	nucleus	31.65	33.65
OQU92338	Sorghum	nucleus	39.02	33.52
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	37.08	33.03
TraesCS6B01G281300.1	Wheat	nucleus	32.43	31.57
TraesCS6A01G242900.1	Wheat	nucleus	32.43	31.53
HORVU6Hr1G062340.1	Barley	nucleus	32.04	31.31
Zm00001d039729_P004	Maize	nucleus	31.14	31.18
Zm00001d029598_P003	Maize	nucleus	36.43	30.39
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	32.56	30.07
Zm00001d039731_P002	Maize	nucleus	15.12	22.24

Protein Annotations

MapMan:15.3.5.3.4	GO:A0A078G7A0	UniProt:A0A078G7A0	EnsemblPlants:CDY22365	ProteinID:CDY22365	ProteinID:CDY22365.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00018847001	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14
InterPro:RST	InterPro:TAF4	UniParc:UPI0004EF4709	SEG:seg	:	:

Description

BnaA06g36870DBnaA06g36870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7A0]

Coordinates

chrLK032130:+:328030..332692

Molecular Weight (calculated)

85445.4 Da

IEP (calculated)

9.599

GRAVY (calculated)

-0.905

Length

774 amino acids

Sequence
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSASL PTVQGNSQSP TEQFTTWTNG IRDSTINLHT QHSTHMKEEL QGSRVENQHQ RADESHPQDL
101: HQAGQRWENP SQVPHPTEKN LTGNQVSESQ YSKLQKMSSQ QARGVEQPVN PINRNPKQVP FAALLPTLIS QLDKDRAMQL RTLYSRLKKN EIPKEGFTRH
201: VKEIVGDQML RMAVSKLQQV GLNQGKMGIQ APTEINNKKS ESDPRGVVHL NQLPPSTGSS VPVQGFTNHP QHNQMQRPPS SFPMYTSSGS FHSFPGPSTN
301: VSGSSLRPHL HDSHMRHVAL NQAVGSTGLG APSQSTTNMM TAPKFERPAS VNDPSRVQGG ATSHFQNSSS LPLNSVPSQG SSLSHVKQES VEQSFEQNKA
401: APGTSKEDLE KESCRMVLSA PSNIDANTSM NARGPLGTSQ AGFNARMPPK KPTVGQKKPL ETLGSSPPPP SKKQKVVQNS MDQSIEQLND VTAVSGVNLR
501: EEEEQLFSGG KEDSRVSEAS RRVVHEEEER LILQKSPLHK MLAEIMAKVG LKQISNDVER CLSLCVEERM RGLLSHIIRL SKQRVDTEKS RHRTFITSDI
601: RLQINEMNHK MKEEWEKKQA EAEKLKKSSE SEEGDGGVDS EKEKEDNRSK GLKGNKEDDD KMRATAANVA ARAAVGGDDT FLKWQLMAEA RQKSVSETGK
701: DGNQKTTSGG GRNSKERQDG GRRFSGPGGR RLGKNQGPSL QPKVVRTISV KDVVAVLERE PQMSKSTLMY RLIQ

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.