CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22365	Canola	nucleus	85.26	89.66
CDX71499	Canola	nucleus	17.44	89.31
CDY46486	Canola	nucleus, plastid	9.21	85.23
CDY25235	Canola	nucleus	74.2	76.75
AT5G43130.2	Thale cress	nucleus	77.4	73.94
CDY68956	Canola	nucleus	49.51	73.27
CDX71498	Canola	cytosol	9.46	72.64
CDX71497	Canola	plastid	7.49	59.8
GSMUA_Achr4P14200_001	Banana	cytosol	4.18	50.0
CDY58727	Canola	peroxisome	6.02	49.49
CDY60273	Canola	nucleus	35.26	39.97
CDY03944	Canola	nucleus	36.73	35.18
Os03t0441000-01	Rice	nucleus	35.01	34.8
TraesCS4A01G163100.1	Wheat	nucleus	35.75	34.77
TraesCS4D01G160000.1	Wheat	nucleus	35.75	34.4
TraesCS4B01G150300.3	Wheat	nucleus	35.75	34.28
KXG31790	Sorghum	nucleus	30.34	33.47
OQU92338	Sorghum	nucleus	36.98	33.41
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	35.26	33.03
Os02t0654400-01	Rice	nucleus	29.12	32.55
Zm00001d029598_P003	Maize	nucleus	34.77	30.5
TraesCS6B01G281300.1	Wheat	nucleus	29.73	30.44
Zm00001d039729_P004	Maize	nucleus	28.87	30.4
HORVU6Hr1G062340.1	Barley	nucleus	29.48	30.3
TraesCS6A01G242900.1	Wheat	nucleus	29.61	30.28
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	29.98	29.12
Zm00001d039731_P002	Maize	nucleus	13.88	21.48

Protein Annotations

MapMan:15.3.5.3.4	GO:A0A078H014	UniProt:A0A078H014	EnsemblPlants:CDY30789	ProteinID:CDY30789	ProteinID:CDY30789.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00046220001	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14	InterPro:RST
InterPro:TAF4	UniParc:UPI0004EF4C63	SEG:seg	:	:	:

Description

BnaC07g16890DBnaC07g16890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H014]

Coordinates

chrLK032260:-:416456..421474

Molecular Weight (calculated)

90116.8 Da

IEP (calculated)

9.852

GRAVY (calculated)

-0.933

Length

814 amino acids

Sequence
(BLAST)

001: MQITTRDWIR LYFFSPSQRI LFPFVGASMD PSIFKLLEED EDESMHSGAD VDAFQAALNR DIEGSASLPT NPPGNSQSPN EQFTTWTNGI GDSNMNLHTQ
101: HSTQIKEEQQ GSGGVDNQHQ RDLKHLQHNH PQDLHQAGQR WENPSQVTGL QNPTGGNEPE RPHNQETESQ YSKLQKMTSQ QPRGVEQPVN PMNRNPKQVP
201: FAALLPSLIA QLDKDRAMQL RALYSRLKKN EIPKEGFTRH VKEIVGDQML RMAVSKLQQV GYNQGKMGIQ TPTEINNKKS ESDPRGVVHL NQLPPSTGSS
301: VPVQGFTNHP QHNQMQRPPS SFPMYTSSGS FHSFPGPSTN VSGSSLRPHL HDSHMRNVAL NQAVGSTGLG VPPQSTTNMM TMPKFERPAS VNDPSRVQGG
401: ATSHFQNSSS LPLNSVPSQG SSLSHVKQES VEQSFEQNKA ASGTSKEDLE KESSRMVFSA PSNIDANTSM NSRGPLGTSQ AGFNARMPPK KPTVGQKKPL
501: ETLGSSPPPP SKKQKVVQSS MDQSIEQLND VTAVSGVNLR EEEEQLFSGG KEDSRVSEAS RRVVHEEEER LILQKSPLQN KLAKIMAKAG LKQISNDVER
601: CLSLCVEERM RGLLTHIIRM SKQRVDTEKS RHRTFITSDI RLQINEMNQK VKEEWEKKQA EAEKLKKPSD SEDGDSGVDG EKEKEDNRSK GLKGNKEDDD
701: KMRTTAANVA ARAAVGGDDT FLKWQLMAEA RQKSVSETGK DGNQKTTSGG GRNSKERQDG GRRFSGPGGR RLGKNQGSSL QPKVVRKISV KDVVAVLERE
801: PQMSKSTLMY RLIQ

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.