CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P14200_001	Banana	cytosol	22.22	32.35
CDY68956	Canola	nucleus	46.46	8.36
CDY22365	Canola	nucleus	47.47	6.07
CDY30789	Canola	mitochondrion	49.49	6.02
CDY25235	Canola	nucleus	45.45	5.72
AT5G43130.2	Thale cress	nucleus	48.48	5.63
CDX71497	Canola	plastid	5.05	4.9
TraesCS4A01G163100.1	Wheat	nucleus	39.39	4.66
TraesCS4D01G160000.1	Wheat	nucleus	39.39	4.61
TraesCS4B01G150300.3	Wheat	nucleus	38.38	4.48
Os03t0441000-01	Rice	nucleus	36.36	4.4
OQU92338	Sorghum	nucleus	38.38	4.22
CDY60273	Canola	nucleus	30.3	4.18
Zm00001d029598_P003	Maize	nucleus	38.38	4.09
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	35.35	4.03
CDX71498	Canola	cytosol	4.04	3.77
CDY03944	Canola	nucleus	28.28	3.29
KXG31790	Sorghum	nucleus	13.13	1.76
Zm00001d039731_P002	Maize	nucleus	9.09	1.71
Zm00001d039729_P004	Maize	nucleus	11.11	1.42
HORVU6Hr1G062340.1	Barley	nucleus	11.11	1.39
Os02t0654400-01	Rice	nucleus	10.1	1.37
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	11.11	1.31
TraesCS6B01G281300.1	Wheat	nucleus	10.1	1.26
TraesCS6A01G242900.1	Wheat	nucleus	10.1	1.26
CDY46486	Canola	nucleus, plastid	0.0	0.0
CDX71499	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY58727	EnsemblPlantsGene:GSBRNA2T00025045001	ProteinID:CDY58727	ProteinID:CDY58727.1	UniParc:UPI0004EE69F2	UniProt:A0A078J6F3
MapMan:35.1	:	:	:	:	:

Description

BnaC07g50670DBnaC07g50670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6F3]

Coordinates

chrLK033693:+:27172..27997

Molecular Weight (calculated)

11183.5 Da

IEP (calculated)

4.982

GRAVY (calculated)

0.044

Length

99 amino acids

Sequence
(BLAST)

1: MTQSLGLEPY RFFPVSMDPT IFKLLEEDEG ESMHLGADVD AFHAALNRDI EGSTSLPTNP GNVPFQLCLY PFPSLIRSLS LRFYFRVCFH MAPCPSCHL

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.