Factsheet for Zm00001d039729_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012396_P003
Zm00001d016330_P001
Zm00001d021426_P002
Zm00001d025112_P001
Zm00001d041530_P001
Zm00001d041766_P001
Zm00001d042792_P002
Zm00001d042879_P002
Zm00001d044810_P001
Zm00001d046810_P002
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT1G27720.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT1G27720.1	Zm00001d021426_P002	AT1G50300.1	17340043
AT1G27720.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT1G27720.1	Zm00001d041530_P001	AT4G34340.1	17340043
AT1G27720.1	Zm00001d041766_P001	AT4G34340.1	17340043
AT1G27720.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT1G27720.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT1G27720.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT1G27720.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT1G27720.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039731_P002	Maize	nucleus	62.61	92.02
KXG31790	Sorghum	nucleus	84.61	88.62
Os02t0654400-01	Rice	nucleus	60.41	64.15
TraesCS6A01G242900.1	Wheat	nucleus	62.23	60.43
HORVU6Hr1G062340.1	Barley	nucleus	61.45	59.97
TraesCS6B01G281300.1	Wheat	nucleus	61.45	59.75
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	62.35	57.52
CDX71498	Canola	cytosol	6.73	49.06
CDX71499	Canola	nucleus	9.96	48.43
GSMUA_Achr4P03380_001	Banana	nucleus	40.49	35.65
GSMUA_Achr4P14210_001	Banana	nucleus	38.68	35.55
CDY46486	Canola	nucleus, plastid	3.88	34.09
Bra035961.1-P	Field mustard	nucleus	31.82	31.58
Bra033662.1-P	Field mustard	nucleus	31.18	31.26
CDY22365	Canola	nucleus	31.18	31.14
CDY25235	Canola	nucleus	31.18	30.62
KRH61389	Soybean	nucleus	34.67	29.29
CDY30789	Canola	mitochondrion	30.4	28.87
AT5G43130.2	Thale cress	nucleus	31.69	28.76
VIT_18s0001g09310.t01	Wine grape	nucleus	34.41	28.73
Solyc04g078050.2.1	Tomato	nucleus	34.54	28.59
KRH52077	Soybean	nucleus	34.28	28.4
KRH15434	Soybean	nucleus	34.28	28.34
Zm00001d029598_P003	Maize	nucleus	33.51	27.91
AT1G27720.1	Thale cress	nucleus	25.49	27.36
KRH05606	Soybean	mitochondrion	33.76	26.74
CDY60273	Canola	nucleus	24.06	25.91
Bra030061.1-P	Field mustard	mitochondrion, nucleus	24.32	23.41
CDY68956	Canola	nucleus	16.43	23.09
CDY03944	Canola	nucleus	23.93	21.76
PGSC0003DMT400055395	Potato	nucleus	10.61	13.99
CDY58727	Canola	peroxisome	1.42	11.11

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.4	UniProt:A0A1D6MKT4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONM29821.1	ProteinID:ONM29824.1
ProteinID:ONM29825.1	ProteinID:ONM29829.1	ProteinID:ONM29831.1	ProteinID:ONM29838.1	PFAM:PF05236	PFAM:PF12174
PANTHER:PTHR15138	PANTHER:PTHR15138:SF16	InterPro:RST	InterPro:TAF4	UniParc:UPI00084377C8	EnsemblPlantsGene:Zm00001d039729
EnsemblPlants:Zm00001d039729_P004	EnsemblPlants:Zm00001d039729_T004	SEG:seg	:	:	:

Description

Transcription initiation factor TFIID subunit 4b

Coordinates

chr3:-:13049177..13066473

Molecular Weight (calculated)

84624.3 Da

IEP (calculated)

9.987

GRAVY (calculated)

-0.961

Length

773 amino acids

Sequence
(BLAST)

001: MSKAPDDHLQ ATEQEGSVHS SQQAGQQHVN TADQFSKTEL TEGSKIEQPV QVEQQSSHLQ QAYPEIQLQQ AETDSFQLAE KETGYFGQQS SAGAKVDVAQ
101: PSVVQQNAKQ TVGQQASSGT QDTKKGPSIP FNMLIPILQA HLDRDKDMQL QTVWAKLRRN EVNKDDFLRV IRNIVGDQML KQAAHKVFVQ MQAQAQRNSQ
201: ANSSQQSLFS QLSAQQMASS GSAQLHDQKI RPPGPPNQGQ KNQVSSSPQA FAPPSGTQPQ NSVHYLAHDN PNQNPDAKGT NVVPNQPSRM NTSVPLQTKN
301: KQHQPTQLQQ ASQQIYGASN PGAQAYPRSI TGSLRSPSLV PETQPSMHAP GMAPAKMVPP PTHPMMQHNA TAWQMHQNRE LKTNAPPPNA NMKQNSESVG
401: KVRMAGTGNS SAKGKQGTPN STPNASGGTK SSKKSGGQKK SLEAAGSMQP SSKKQKTSGG SQEQSIDELN DVTAASGVNI REEEEQLLSA PKEESLASQE
501: ARRIAKEEEE NLFLRKGPLL RKLAEIAQKC DLKNISDDVE YCLSMCVEER LRRLISTLIR VSKQRIDTEK TGHRLVITSD VGRQILQMNQ RAKEEWDKKQ
601: AEEADKNKKQ TEADGSGATE LEKEKEESRP KNVKPNKEED DKMRANAANV AARQAVGGSD MLSKWQLMAE QARQKREGID VSAASQPGRG PGSRQLSKFG
701: KGPGEHPEGS KRSHSMAFGT GGMKRPGRTA FAGPQRLISV KDVICALERE PQMTKSRLIY RLHERLPVDS TVD

Best Arabidopsis Sequence Match ( AT1G27720.3 )
(BLAST)

001: MKLQKMSSKE TPWVEKTVDP VNHNLRLARV TDLLRTVVDH QPGKKTHCLN LHYKLKRKEL TMEEFMRQLR DLVGDQIIRS VISQLPQLKP GNMGIKVPGR
101: SNHDKVSKSA EFTAQESDPR EVHVNQLSST TSGTLNSSTT VQGLNKHPEQ HMQLPSSSFH MDTKSGSLNP YPGTNVTSPG SSSRAKLPDF QHRENNQNVG
201: IASVGGPTKS TINMTTVPKF ERPTFVNGPS RVQDGPISDF PKNSSFPLYS APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL
301: KQKNAIPISS NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
401: SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL TEIMGKSGLK HIDHDVERCL SLCVEERMRG LLFNIIRISK
501: QRTDAEKCRN RTFITSDIRK EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA VGGDDRFSKW KLMAEARQRS
601: SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE KEPQMSRSTL LYRVYNRICS DV

Arabidopsis Description

TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.