Factsheet for Zm00001d041530_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012396_P003
Zm00001d016330_P001
Zm00001d025112_P001
Zm00001d029598_P003
Zm00001d039729_P004
Zm00001d039731_P002
Zm00001d040757_P002
Zm00001d040759_P002
Zm00001d041530_P001
Zm00001d041766_P001
Zm00001d042792_P002
Zm00001d042879_P002
Zm00001d044810_P001
Zm00001d046810_P002
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	Zm00001d040757_P002	AT1G02680.1	17340043
AT4G34340.1	Zm00001d040759_P002	AT1G02680.1	17340043
AT4G34340.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT4G34340.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT4G34340.1	Zm00001d029598_P003	AT1G27720.1	17340043
AT4G34340.1	Zm00001d039729_P004	AT1G27720.1	17340043
AT4G34340.1	Zm00001d039731_P002	AT1G27720.1	17340043
AT4G34340.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT4G34340.1	Zm00001d041530_P001	AT4G34340.1	17340043
AT4G34340.1	Zm00001d041766_P001	AT4G34340.1	17340043
AT4G34340.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT4G34340.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT4G34340.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT4G34340.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT4G34340.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17247	Sorghum	cytosol	89.64	86.96
Zm00001d041766_P001	Maize	cytosol	86.55	83.51
TraesCS5A01G081700.1	Wheat	cytosol	77.59	76.52
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	76.75	76.11
TraesCS5B01G084700.1	Wheat	cytosol	77.03	75.97
Os12t0574800-02	Rice	nucleus	73.95	72.13
GSMUA_Achr9P26740_001	Banana	nucleus	43.42	47.4
GSMUA_Achr11P...	Banana	nucleus	44.54	44.04
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	43.42	42.12
GSMUA_Achr9P09310_001	Banana	nucleus	37.82	40.54
KRH19914	Soybean	cytosol	38.38	38.7
Solyc09g008150.1.1	Tomato	nucleus	40.34	38.61
PGSC0003DMT400009911	Potato	nucleus	39.78	37.97
VIT_14s0068g00340.t01	Wine grape	nucleus	39.5	37.4
KRH32528	Soybean	cytosol	36.97	37.08
KRH01313	Soybean	cytosol	38.66	36.22
KRH45059	Soybean	cytosol	36.97	34.65
AT4G34340.1	Thale cress	nucleus	33.89	34.28
Bra011521.1-P	Field mustard	nucleus	31.93	32.95
CDX75423	Canola	nucleus	31.65	32.56
CDY69783	Canola	nucleus	31.93	31.75
Zm00001d000165_P001	Maize	mitochondrion	19.61	28.11
Bra008690.1-P	Field mustard	nucleus	27.45	27.07
Bra023525.1-P	Field mustard	cytosol	28.29	26.79
AT5G15570.1	Thale cress	nucleus	27.45	25.72
Bra039159.1-P	Field mustard	nucleus	26.89	25.46
CDY43254	Canola	nucleus	25.21	25.0
AT3G02160.1	Thale cress	cytosol	27.45	24.69
CDY60474	Canola	nucleus	25.77	24.4
CDX74271	Canola	cytosol	25.49	24.27
Bra001033.1-P	Field mustard	cytosol	25.21	23.81
Zm00001d050853_P001	Maize	cytosol	14.85	23.14
CDX91978	Canola	cytosol, extracellular, nucleus	24.65	22.62

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	UniProt:A0A1D6MWS3	InterPro:BTP	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONM33206.1	PFAM:PF07524	PFAM:PF10406
PANTHER:PTHR12321	PANTHER:PTHR12321:SF45	SMART:SM00576	InterPro:TFIID_su8_C	UniParc:UPI0002210058	EnsemblPlantsGene:Zm00001d041530
EnsemblPlants:Zm00001d041530_P001	EnsemblPlants:Zm00001d041530_T001	SEG:seg	:	:	:

Description

Transcription initiation factor TFIID subunit 8

Coordinates

chr3:+:126035560..126036633

Molecular Weight (calculated)

38646.1 Da

IEP (calculated)

8.247

GRAVY (calculated)

-0.347

Length

357 amino acids

Sequence
(BLAST)

001: MSGASGSGDD FGRAVARAAV AQALEAAGFD CAHRSAVDAV VDILLRYITH LGRSAAFHAN LAGRALANEL DVIQALEEVG ADTDGFAGAA ATGHCLVSSG
101: VVRDLMAFVD SKDEVPFARP LPRFPVQRVQ PQPTASLAVA GRETGMRHVP EWLPVFPDPH TYVSTEVWVE PPATKDRVDK VEQVRQRRKA EKSLLSLQQR
201: LAMAGADGFR PVAAVAQDNA EKGKEIQAAG TKRNPFLEPA LPPGEKYVSE VDMPPEKKKP SVLEAFAPAI QARTIKEFDA GAGLDQNQRN IVPKERARVH
301: LKIGFGKKPF AAALNSRALD LREDPSFLKE EAKDDKKRRA GMILRASMEN PQELPQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.