CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, nucleus
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001033.1-P	Field mustard	cytosol	92.29	94.97
CDX74271	Canola	cytosol	89.72	93.07
CDY60474	Canola	nucleus	63.5	65.52
CDY43254	Canola	nucleus	51.93	56.11
AT3G02160.1	Thale cress	cytosol	54.76	53.65
VIT_14s0068g00340.t01	Wine grape	nucleus	33.93	35.01
KRH01313	Soybean	cytosol	29.56	30.18
KRH45059	Soybean	cytosol	29.56	30.18
GSMUA_Achr11P...	Banana	nucleus	26.22	28.25
GSMUA_Achr9P26740_001	Banana	nucleus	23.39	27.83
TraesCS5A01G081700.1	Wheat	cytosol	24.42	26.24
TraesCS5B01G084700.1	Wheat	cytosol	24.16	25.97
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	23.65	25.56
EES15849	Sorghum	cytosol	24.68	25.53
Os12t0574800-02	Rice	nucleus	23.91	25.41
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	22.36	24.86
TraesCS7D01G036000.1	Wheat	mitochondrion	21.59	24.71
Zm00001d041530_P001	Maize	cytosol	22.62	24.65
GSMUA_Achr9P09310_001	Banana	nucleus	21.08	24.62
EES17247	Sorghum	cytosol	22.88	24.18
TraesCSU01G065200.1	Wheat	cytosol	21.59	23.66
Zm00001d041766_P001	Maize	cytosol	22.36	23.51
CDY69783	Canola	nucleus	21.59	23.4
CDX75423	Canola	nucleus	20.82	23.34
CDY02371	Canola	cytosol	13.37	21.76
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	21.59	21.37
Os03t0603300-01	Rice	cytosol, plastid	15.17	21.15

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	EnsemblPlants:CDX91978	ProteinID:CDX91978	ProteinID:CDX91978.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00153627001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF07524	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	SignalP:SignalP-noTM
InterPro:TAF8	UniParc:UPI0004EF2520	:	:	:	:

Description

BnaC03g32800D

Coordinates

chrLK031870:+:1099243..1100501

Molecular Weight (calculated)

42342.8 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.345

Length

389 amino acids

Sequence
(BLAST)

001: MSWFFTQEMV IHVMLGELVS LNMSNGVGEG GRSQSRESHG KRELFQGSDF AYALGRIAVA QICESVEVNV SQQSQKGVRF SSFQESALDT LTGVAVQYIQ
101: SIGKAAQFYA NVAGRVEGNS LDIVQALTDL GSGSGVSDIE CCLGDSGIVK DVIRYTGEAE EVSFVYALPR FPINKEKRDS PSFYEVGAEP PYEHIPVWLP
201: AFPETNVGAI EGNGPSLPSI QHSFNGGGLE VLKSPKSARY STQGEEEMEG NPFLAAPLRF VENEVSPVVR LLELSNEVVG INHVPDKHTS NNNSHIPVLE
301: ASTPCDDINN KNKLSESEDG EKKGGARPQQ TLLCFKIGTL KRPSCLAIKG SVQGLRWFQE GEVKREKKSE TEENGERFDL ANLGPDVVI

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.