Factsheet for GSMUA_Achr11P06820_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P14200_001
GSMUA_Achr7P10670_001
GSMUA_Achr7P26980_001
GSMUA_Achr9P09310_001
GSMUA_Achr9P22400_001
GSMUA_Achr9P22410_001
GSMUA_Achr9P26740_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	GSMUA_AchrUn_...	AT1G02680.1	17340043
AT4G34340.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT4G34340.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT4G34340.1	GSMUA_Achr10P...	AT3G10070.1	17340043
AT4G34340.1	GSMUA_Achr11P...	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr9P09310_001	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr9P26740_001	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr7P26980_001	AT5G25150.1	17340043
AT4G34340.1	GSMUA_Achr9P22400_001	AT5G25150.1	17340043
AT4G34340.1	GSMUA_Achr9P22410_001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P26740_001	Banana	nucleus	55.12	60.86
GSMUA_Achr9P09310_001	Banana	nucleus	53.19	57.66
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	48.2	47.28
VIT_14s0068g00340.t01	Wine grape	nucleus	47.37	45.36
Zm00001d041530_P001	Maize	cytosol	44.04	44.54
EES17247	Sorghum	cytosol	44.88	44.02
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	43.77	43.89
TraesCS5B01G084700.1	Wheat	cytosol	43.77	43.65
TraesCS5A01G081700.1	Wheat	cytosol	43.49	43.37
Solyc09g008150.1.1	Tomato	nucleus	43.77	42.36
Os12t0574800-02	Rice	nucleus	42.94	42.35
EES15849	Sorghum	cytosol	44.04	42.29
Zm00001d041766_P001	Maize	cytosol	42.66	41.62
PGSC0003DMT400009911	Potato	nucleus	42.94	41.44
Os03t0603300-01	Rice	cytosol, plastid	31.86	41.22
KRH32528	Soybean	cytosol	39.89	40.45
KRH19914	Soybean	cytosol	39.34	40.11
KRH01313	Soybean	cytosol	42.11	39.9
KRH45059	Soybean	cytosol	41.0	38.85
TraesCS7D01G036000.1	Wheat	mitochondrion	35.73	37.94
CDX75423	Canola	nucleus	36.29	37.75
TraesCSU01G065200.1	Wheat	cytosol	36.29	36.9
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	35.73	36.86
Bra011521.1-P	Field mustard	nucleus	34.9	36.42
AT4G34340.1	Thale cress	nucleus	35.18	35.98
CDY69783	Canola	nucleus	35.73	35.93
CDY43254	Canola	nucleus	30.75	30.83
AT3G02160.1	Thale cress	cytosol	32.96	29.97
Bra039159.1-P	Field mustard	nucleus	31.02	29.71
CDY60474	Canola	nucleus	30.75	29.44
Bra023525.1-P	Field mustard	cytosol	30.75	29.44
AT5G15570.1	Thale cress	nucleus	30.75	29.13
Bra008690.1-P	Field mustard	nucleus	28.81	28.73
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	31.02	28.5
Bra001033.1-P	Field mustard	cytosol	29.09	27.78
CDX74271	Canola	cytosol	28.81	27.73
CDX91978	Canola	cytosol, extracellular, nucleus	28.25	26.22

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr11G06820_001	EnsemblPlants:GSMUA_Achr11P06820_001	EnsemblPlants:GSMUA_Achr11T06820_001	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M0RQ12	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53
SMART:SM00576	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI000296F4C7	SEG:seg	:

Description

Putative bromodomain associated family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G06820_001]

Coordinates

chr11:-:5384862..5385947

Molecular Weight (calculated)

39843.5 Da

IEP (calculated)

9.838

GRAVY (calculated)

-0.442

Length

361 amino acids

Sequence
(BLAST)

001: MSDGRKNSGR GQQISSKKGR LSGGDDFGHA IAKIAVAQLC ESTGFHYSRR SAIDALAEVA VRYICDLGKS ANFYANLAGR ADCNVFDVIQ GIQDLDSWRG
101: FSGASGVHRC LVNTGVVREI TQFVSTEEEI PFVQPIPRFP VSRMPKPAPS FVQAGEEPPG EHIPNWLPRF PDPHTYVHTP VWNKRDTDVK ADMVELAKRR
201: KKAERSLLSL QQRLACNSTA GFRPTKDGHV GNGNQVNNNP FLASPLPYGE KEVSEIASPL KAYAGKRLSV LETFVPVIKA AKVGSLDFNT NERKLLHGIR
301: PTVHFKVGTV KKSVTASLPS DTLIADKDSW SLKYDEKDDK KKRAEIIFRA VIDKPHELAQ L

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.