Factsheet for GSMUA_Achr10P10280_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11610_001
GSMUA_Achr4P14200_001
GSMUA_Achr7P10670_001
GSMUA_Achr7P11400_001
GSMUA_Achr7P26980_001
GSMUA_Achr9P06160_001
GSMUA_Achr9P09310_001
GSMUA_Achr9P22400_001
GSMUA_Achr9P22410_001
GSMUA_Achr9P26740_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	GSMUA_AchrUn_...	AT1G02680.1	17340043
AT3G10070.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT3G10070.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT3G10070.1	GSMUA_Achr2P11610_001	AT1G32750.1	17340043
AT3G10070.1	GSMUA_Achr10P...	AT1G54140.1	17340043
AT3G10070.1	GSMUA_Achr7P11400_001	AT1G54140.1	17340043
AT3G10070.1	GSMUA_Achr9P06160_001	AT4G20280.1	17340043
AT3G10070.1	GSMUA_Achr11P...	AT4G34340.1	17340043
AT3G10070.1	GSMUA_Achr9P09310_001	AT4G34340.1	17340043
AT3G10070.1	GSMUA_Achr9P26740_001	AT4G34340.1	17340043
AT3G10070.1	GSMUA_Achr7P26980_001	AT5G25150.1	17340043
AT3G10070.1	GSMUA_Achr9P22400_001	AT5G25150.1	17340043
AT3G10070.1	GSMUA_Achr9P22410_001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03700.t01	Wine grape	nucleus	42.7	40.86
Os01t0858500-01	Rice	plastid	34.27	40.53
Bra034092.1-P	Field mustard	plastid	23.88	31.6
KRH30849	Soybean	nucleus, plastid	39.04	27.42
KRH32724	Soybean	nucleus, plastid	37.64	26.43
Zm00001d042792_P002	Maize	nucleus, plastid	36.24	26.22
EES03919	Sorghum	nucleus, plastid	35.96	25.7
CDY00904	Canola	nucleus, plastid	37.08	25.05
AT3G10070.1	Thale cress	nucleus, plastid	37.92	25.05
CDY60164	Canola	nucleus, plastid	36.52	24.67
Bra029816.1-P	Field mustard	nucleus, plastid	36.52	24.67
PGSC0003DMT400023148	Potato	nucleus, plastid	38.76	24.6
TraesCS3B01G403500.1	Wheat	nucleus	37.36	24.31
TraesCS3D01G364400.1	Wheat	cytosol, plastid	37.36	24.31
Solyc09g009680.2.1	Tomato	nucleus, plastid	38.2	24.03
HORVU3Hr1G084430.4	Barley	plastid	36.24	23.67
TraesCS3A01G371300.1	Wheat	nucleus, plastid	36.8	23.65
CDY41320	Canola	plastid	22.47	23.19
CDY22214	Canola	plastid	21.35	22.29
GSMUA_Achr7P10670_001	Banana	plastid	32.3	17.88

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	ncoils:Coil	GO:GO:0000124	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr10G10280_001	EnsemblPlants:GSMUA_Achr10P10280_001
EnsemblPlants:GSMUA_Achr10T10280_001	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M0RH04	PFAM:PD012998	PFAM:PF03847
PANTHER:PTHR12264	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI00029570EF	SEG:seg

Description

Putative Transcription initiation factor TFIID subunit 12 [Source:GMGC_GENE;Acc:GSMUA_Achr10G10280_001]

Coordinates

chr10:-:19862748..19868187

Molecular Weight (calculated)

38731.6 Da

IEP (calculated)

10.363

GRAVY (calculated)

-0.797

Length

356 amino acids

Sequence
(BLAST)

001: MIGSLSTTTQ IRPGGVTGPP QQRLVQPTSR AASPSTNQTL GSQKFPNSGL IRGPSMVSSG SISSVPQQSL VSSQGKQMPA SSSSFRPQAK PNVLQQRPHS
101: LQQTQQPPSA ASHQQQIPTS QQQQQQKQQQ FQMQLQQQQQ QPQFHQQHSS PRQTQEYYNQ QNLQLRNQPQ LLQQQPARPL GPATTKPNPP TLVHTNVAQP
201: AVTHPVVGTD AAESGDHILG KRSLRELVSQ IDPSEKLDSE VEDVLVEIAE DFVESVATFA CSLAKHRKST TLEAKDILLH VERNWNMMLP GYGGDEIKCY
301: KKQFTNDIHK ERLAVIKKSM AATGDTANPK NASGGPAAAS SKSHAQKAPP IGSPKA

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.