CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH02410
KRH05348
KRH05606
KRH06174
KRH15434
KRH15679
KRH19914
KRH31624
KRH31641
KRH31820
KRH32528
KRH39697
KRH47589
KRH50675
KRH52077
KRH52333
KRH61389
KRH61671
KRH62676
KRH64870
KRH73515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	KRH31624	AT1G02680.1	17340043
AT3G10070.1	KRH31641	AT1G02680.1	17340043
AT3G10070.1	KRH31820	AT1G02680.1	17340043
AT3G10070.1	KRH06174	AT1G17440.1	17340043
AT3G10070.1	KRH47589	AT1G17440.1	17340043
AT3G10070.1	KRH05606	AT1G27720.1	17340043
AT3G10070.1	KRH15434	AT1G27720.1	17340043
AT3G10070.1	KRH52077	AT1G27720.1	17340043
AT3G10070.1	KRH61389	AT1G27720.1	17340043
AT3G10070.1	KRH39697	AT1G32750.1	17340043
AT3G10070.1	KRH62676	AT1G32750.1	17340043
AT3G10070.1	KRH02410	AT1G54140.1	17340043
AT3G10070.1	KRH50675	AT1G54140.1	17340043
AT3G10070.1	KRH73515	AT1G54140.1	17340043
AT3G10070.1	KRH64870	AT4G20280.1	17340043
AT3G10070.1	KRH19914	AT4G34340.1	17340043
AT3G10070.1	KRH32528	AT4G34340.1	17340043
AT3G10070.1	KRG99418	AT5G25150.1	17340043
AT3G10070.1	KRH05348	AT5G25150.1	17340043
AT3G10070.1	KRH15679	AT5G25150.1	17340043
AT3G10070.1	KRH52333	AT5G25150.1	17340043
AT3G10070.1	KRH61671	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30849	Soybean	nucleus, plastid	80.47	80.47
VIT_08s0007g03700.t01	Wine grape	nucleus	39.25	53.49
PGSC0003DMT400023148	Potato	nucleus, plastid	44.38	40.11
AT3G10070.1	Thale cress	nucleus, plastid	42.41	39.89
CDY00904	Canola	nucleus, plastid	41.22	39.66
Solyc09g009680.2.1	Tomato	nucleus, plastid	43.98	39.4
CDY60164	Canola	nucleus, plastid	40.83	39.28
Bra029816.1-P	Field mustard	nucleus, plastid	40.43	38.9
GSMUA_Achr10P...	Banana	plastid	26.43	37.64
Os01t0858500-01	Rice	plastid	22.29	37.54
Bra034092.1-P	Field mustard	plastid	18.93	35.69
TraesCS3B01G403500.1	Wheat	nucleus	34.32	31.81
EES03919	Sorghum	nucleus, plastid	30.77	31.33
TraesCS3A01G371300.1	Wheat	nucleus, plastid	34.12	31.23
HORVU3Hr1G084430.4	Barley	plastid	33.14	30.83
TraesCS3D01G364400.1	Wheat	cytosol, plastid	33.14	30.71
Zm00001d042792_P002	Maize	nucleus, plastid	29.39	30.28
CDY41320	Canola	plastid	20.12	29.57
CDY22214	Canola	plastid	19.13	28.45
KRH06174	Soybean	nucleus, plastid	18.34	26.65
KRH47589	Soybean	nucleus, plastid	24.26	20.53

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100781682	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EMBL:ACUP02006154	EnsemblPlantsGene:GLYMA_10G070700
GO:GO:0000124	GO:GO:0001102	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	UniProt:I1L9B8	InterPro:IPR009072	ProteinID:KRH32723.1	EnsemblPlants:KRH32724	ProteinID:KRH32724
ProteinID:KRH32724.1	PFAM:PD012998	PFAM:PF03847	PRINTS:PR01217	PANTHER:PTHR12264	PANTHER:PTHR12264:SF21
SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI000233CF89	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:7105215..7113185

Molecular Weight (calculated)

52987.3 Da

IEP (calculated)

10.890

GRAVY (calculated)

-0.718

Length

507 amino acids

Sequence
(BLAST)

001: MDPQAPATAT TARSAAAEPS QSQPPKPSPP LPLPPPSTSS TPPISAPPQP PPNTNPSPNP NPSPAPGPGP IQAPSPKPPT PTPTTTPTPP QPFNRALSPP
101: SQPQFPHYSS PSPPSSAPGA APPPRGGMAI GVPAHHQSPS PPFSSSFGQH FGGLGRTGVN VAESTSNSST SQVRTPVQGT GMLGSQMRPS GIGAHQQRPV
201: QSSLRPPPPS APNNQPAGSQ SFQGHGLMRS SSVGSPATPS PSSSLSMQSL NQPWLSSGPQ GKPPLPSAAY RQQLNPQSMQ QRPHIPLQQQ STPTPLLANQ
301: SQEHFGQQVL PPRAPLHVPH QPQIMRVHGP GNQKPSSLVA AQSSAAQPGT RSRLTNTDTD ESSNSILSKR SIHELVNQVD PLEKLEPEVA DILVDIAENF
401: LESITRSGCS LAKHRKSTTL EAKDILLHLE KNWNMTLLGF GGDDIKSYRR PTTSDIHKER LTVIKKSMAA TEAAHGKGSA GQASGSAKGN QGKTPLNIIG
501: LPNLKNL

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.