Factsheet for Os01t0858500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0338100-00
Os01t0680400-01
Os01t0846900-01
Os02t0654400-01
Os03t0408500-01
Os03t0441000-01
Os03t0603300-01
Os06t0645700-01
Os06t0645800-01
Os06t0645901-00
Os07t0205200-02
Os07t0612500-00
Os12t0574800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	Os01t0338100-00	AT1G02680.1	17340043
AT3G10070.1	Os01t0846900-01	AT1G17440.1	17340043
AT3G10070.1	Os02t0654400-01	AT1G27720.1	17340043
AT3G10070.1	Os03t0441000-01	AT1G27720.1	17340043
AT3G10070.1	Os06t0645700-01	AT1G32750.1	17340043
AT3G10070.1	Os06t0645800-01	AT1G32750.1	17340043
AT3G10070.1	Os06t0645901-00	AT1G32750.1	17340043
AT3G10070.1	Os03t0408500-01	AT1G54140.1	17340043
AT3G10070.1	Os07t0612500-00	AT1G54140.1	17340043
AT3G10070.1	Os01t0680400-01	AT4G20280.1	17340043
AT3G10070.1	Os03t0603300-01	AT4G34340.1	17340043
AT3G10070.1	Os12t0574800-02	AT4G34340.1	17340043
AT3G10070.1	Os07t0205200-02	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	40.53	34.27
VIT_08s0007g03700.t01	Wine grape	nucleus	42.19	34.14
EES03919	Sorghum	nucleus, plastid	56.48	34.14
HORVU3Hr1G084430.4	Barley	plastid	61.79	34.13
Zm00001d042792_P002	Maize	nucleus, plastid	55.48	33.94
TraesCS3D01G364400.1	Wheat	cytosol, plastid	61.13	33.64
TraesCS3B01G403500.1	Wheat	nucleus	60.47	33.27
TraesCS3A01G371300.1	Wheat	nucleus, plastid	60.8	33.03
Bra034092.1-P	Field mustard	plastid	27.57	30.86
CDY41320	Canola	plastid	27.91	24.35
KRH30849	Soybean	nucleus, plastid	38.54	22.88
CDY22214	Canola	plastid	25.91	22.87
CDY60164	Canola	nucleus, plastid	39.53	22.58
Bra029816.1-P	Field mustard	nucleus, plastid	39.53	22.58
KRH32724	Soybean	nucleus, plastid	37.54	22.29
AT3G10070.1	Thale cress	nucleus, plastid	39.87	22.26
CDY00904	Canola	nucleus, plastid	38.54	22.01
PGSC0003DMT400023148	Potato	nucleus, plastid	39.53	21.21
Solyc09g009680.2.1	Tomato	nucleus, plastid	39.53	21.02
Os01t0846900-01	Rice	nucleus	31.89	17.71

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	ProteinID:BAF06774.1	ProteinID:BAS75319.1	ncoils:Coil
ProteinID:EEE55703.1	GO:GO:0000124	GO:GO:0001102	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006412	GO:GO:0006413	GO:GO:0006464	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os01g0858500	EnsemblPlants:Os01t0858500-01	PFAM:PD012998	PFAM:PF03847
PANTHER:PTHR12264	UniProt:Q0JHK4	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0000DD8E04
SEG:seg	:	:	:	:	:

Description

Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15). (Os01t0858500-01)

Coordinates

chr1:-:37118464..37120942

Molecular Weight (calculated)

33667.5 Da

IEP (calculated)

10.207

GRAVY (calculated)

-1.059

Length

301 amino acids

Sequence
(BLAST)

001: MASSPSMPLQ QTPPNVSAPL RPPQHRPHPR PYHAPAISHP QNALLTQQQQ KLPQHQHLQQ QQQQQQQQQK LQQQQQQQQQ KLQQQQQQQQ QKLQQQQQQQ
101: QNQPQHSSQQ SQQTTTLRNQ QQISQQQTAR TPVSMAQKLD SPAVLKATNV QSGDMASVDV DAGGSGNRLL SKRSIHELVA QIDPSEKLDP EVEDVLIDIA
201: EDFVESVATF ACSLAKHRKS SILEAKDVLL HAERSWNITL PGFSGDEIKL YKKPHVNDIH RERLTLIKKS MASESNAKGS AAQAAANQKN QTPKPPATGS
301: P

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.